Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30799
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  68   1e-11
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 54   2e-07
SB_56638| Best HMM Match : DAGK_cat (HMM E-Value=7.8e-19)              32   0.50 
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_54573| Best HMM Match : Bacterial_GLE1 (HMM E-Value=8.4)            30   2.6  
SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)               29   3.5  
SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
 Frame = +3

Query: 111 TFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYK--YPEELAKVS*AVTLL 275
           + N+D +K+VYSNED E+K+IPYFWE FD E YS+W+ EYK  Y ++L  V  A  L+
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLV 59



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 20/37 (54%), Positives = 30/37 (81%)
 Frame = +2

Query: 257 MSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 367
           M+CNL+ GM QRL+K+ K  F S+C+FGE++N +I+G
Sbjct: 54  MACNLVGGMIQRLEKLVKNGFGSICIFGENHNCSIAG 90


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +2

Query: 404 LSSDWQVDYESYDWKKLDPSSEETKKLVQDYF-SWNETDKDGRKFNQGKIFQ 556
           L+ DW VD  SY  ++L+P     KKL++DYF    E    G+KFNQGK+F+
Sbjct: 152 LNEDWNVDAPSYTSRRLNPDDPADKKLIEDYFIQREELTYRGKKFNQGKVFK 203


>SB_56638| Best HMM Match : DAGK_cat (HMM E-Value=7.8e-19)
          Length = 836

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
 Frame = +1

Query: 112 PSTWMISSVSTPTKTKLNLFLTS----------GRSLTPRTIPFGMPNTNTLRNSLRCHE 261
           PS W+  S S  +  +++ F+ S          GRS+ P  +  G P + +L ++   H 
Sbjct: 86  PSLWISDSSSMDSGFQVSFFMDSCLPVMGDRFPGRSVVPVPLTTGFPVSRSLCSACASHH 145

Query: 262 L*PYYGYVPEVRQNAQTGFRIRLPV 336
             P    VP       TGFR+R PV
Sbjct: 146 RFPGRSVVP---VPLTTGFRVRFPV 167


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 297 TKCANRLSHPSACLVKTTI-PPSPECGCGAERSSCSRCRLIGRW 425
           T  +N  S   + LV+ +  PPSP C C A       C+ IG W
Sbjct: 134 TTGSNSASKVRSVLVEISARPPSPRCKCPAVIDGGMSCQFIGAW 177


>SB_54573| Best HMM Match : Bacterial_GLE1 (HMM E-Value=8.4)
          Length = 171

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 413 QTTAGTRAPFRATPTLRRWWNCCLHQTG 330
           Q  AG + P     TLRRW   C+ Q G
Sbjct: 78  QALAGEKRPQTTADTLRRWIKSCMEQAG 105


>SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)
          Length = 246

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 385 SAPHPHSGDGGIVVFTKQADGCESLFAHF 299
           S PHP  GDGG ++   + +G E  ++ F
Sbjct: 138 SRPHPRQGDGGKLLIEDELNGVEYSYSFF 166


>SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 448 ETGSFERGDQETCPGLLLVERNRQRR*KVQPGQDISSECRQTFQPMYTHFIPITIKNF 621
           E  +  RG+ + CP  +L  +++QR+ +    +  SS+  +   P  T  +P  I N+
Sbjct: 566 EEKTVNRGELQVCPKAILETQHQQRQQRAMAEEGESSDEEEDGSPELTIELPREIPNY 623


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 393 SSFPRHTHTPEMVELLSSPNRQTDAKACLR 304
           S+ PR   + E + LL  P  + DA+AC+R
Sbjct: 413 SAIPRSRRSFESLPLLQQPTSRRDARACVR 442


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 429 TSPTTGRNWILRARRPRNLSRTTSRGTKPTKTVESSTRARYFK*MPTNVP 578
           T P   +N   +  RP NLSR+ +R   P + V +   A      P  VP
Sbjct: 771 TRPARKKNPAKKGTRPANLSRSRTRSNIPVQKVLAEQAAANSPNSPNGVP 820


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,043,084
Number of Sequences: 59808
Number of extensions: 666620
Number of successful extensions: 1766
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)