Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30798
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...   155   4e-40
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   6.8  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score =  155 bits (376), Expect = 4e-40
 Identities = 70/84 (83%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   DSEIEKLSTVYWFTVEFGLCKENQQLKAYGAALLSSIGELLHALSDKPELRPFEPASTSV 180
           D+EIEKLSTVYWFTVEFGLCKE+  +KAYGA LLS+ GELLHALSDKPELRPFEPA T+V
Sbjct: 390 DAEIEKLSTVYWFTVEFGLCKESGVVKAYGAGLLSAYGELLHALSDKPELRPFEPAVTAV 449

Query: 181 QPYQDQEYQPIYYVAETFEDAKDK 252
           QPYQDQEYQPIY+VAE+F+D KDK
Sbjct: 450 QPYQDQEYQPIYFVAESFDDMKDK 473



 Score = 98.3 bits (234), Expect = 6e-23
 Identities = 43/60 (71%), Positives = 52/60 (86%)
 Frame = +3

Query: 249 QIRRWVSTMSRPFEVRFNPHTERVEVLDSVDKLETLIWQLNTEMLHLTNAVKKLKGSHFE 428
           + RRWVS MSRPFEVRFNPHT RVEVLDSV+KLETL+ QLNTE+LHL+NA+ K+K   ++
Sbjct: 473 KFRRWVSAMSRPFEVRFNPHTGRVEVLDSVEKLETLVHQLNTEVLHLSNAINKMKAPSYQ 532


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 343 SWKLSSGSSTPRCCISPTPLRSSR 414
           +WK+   S +P   +SP    SSR
Sbjct: 108 TWKVEEDSPSPTSSVSPEVKDSSR 131


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 252 IRRWVSTMSRPFEVRFNPHTERVEVLDSVDKLETLIWQLNTE 377
           + R V+  S P EV+F    +++  +D  +++ T    LN E
Sbjct: 18  LERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLE 59


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 252 IRRWVSTMSRPFEVRFNPHTERVEVLDSVDKLETLIWQLNTE 377
           + R V+  S P EV+F    +++  +D  +++ T    LN E
Sbjct: 18  LERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLE 59


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 252 IRRWVSTMSRPFEVRFNPHTERVEVLDSVDKLETLIWQLNTE 377
           + R V+  S P EV+F    +++  +D  +++ T    LN E
Sbjct: 18  LERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLE 59


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 154 PFEPASTSVQPYQDQEYQPIYY 219
           P  PA +    Y D  Y P YY
Sbjct: 22  PHNPAYSPPPSYCDPWYNPYYY 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,722
Number of Sequences: 336
Number of extensions: 4382
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)