Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30798
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    29   1.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    29   1.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   4.3  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   4.3  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.7  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   7.5  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 67  NQQLKAYGAALLSSIGELLHALSDKPELRPFE-PASTSV---QPYQDQEYQP 210
           ++Q K   +A  S+I ++ H +SDKP   P   P+S S+   +P++++  +P
Sbjct: 650 SRQTKTVTSANSSNIRDMEHTISDKPRSEPDAIPSSKSMHSNKPFEEKSEKP 701


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 594 TKKEFNEVPSDGYHTCSHTFHARQQQSYT 508
           T ++++  PS  + T +H FH+R  Q  T
Sbjct: 259 TSRQYSRSPSPDFRTRNHQFHSRDSQPIT 287


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 349 KLSSGSSTPRCCISPTPLRSSRAHTSS 429
           K+SSG+STPR   +P   RS+R H  S
Sbjct: 653 KVSSGTSTPRMA-APIARRSNRHHPYS 678


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -2

Query: 573 VPSDGYHTCSHTFHARQQQSYTIISLAIQNGQGRVH*TTVVYCKGKEITRS 421
           +P  GY    H+F   +  S   IS   +  + R+  T  VY   K   ++
Sbjct: 63  LPKKGYEKALHSFIIHEDPSLNYISALKETAKERIRVTVPVYSSRKSYVQT 113


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = -2

Query: 573 VPSDGYHTCSHTF-HARQQQSYT-----IISLAIQNGQGRVH*TTVVYCKGKEITR 424
           VP++ YHTC     +A     Y      ++S    NG+  +H   +VY  GK + +
Sbjct: 294 VPANMYHTCKRVLPNATIYPQYGTTESGLVSFLAYNGKDTLHNKELVYFPGKTVKK 349


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 744 LKILIPNINGLKGIPAMYNFSSVKWGNSENLCT 646
           +K L  N  GL  +P + NFS      S N C+
Sbjct: 365 MKKLFNNPTGLHSLPNLPNFSEAGSAKSSNFCS 397


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 537 FHARQQQSYTIISLAIQNGQGRVH*TTVVYCKGKEITRSVSP 412
           FH   Q    II +AIQ      H  T V+ KG+ + + + P
Sbjct: 200 FHLAVQAQVPIIPIAIQTYGHLFHPPTKVFNKGEALIKVLDP 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,608
Number of Sequences: 5004
Number of extensions: 74110
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)