Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30798
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   1e-24
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   6.1  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score =  110 bits (265), Expect = 1e-24
 Identities = 46/85 (54%), Positives = 66/85 (77%)
 Frame = +1

Query: 1   DSEIEKLSTVYWFTVEFGLCKENQQLKAYGAALLSSIGELLHALSDKPELRPFEPASTSV 180
           D  +EKL+T+YWFTVEFGLC++  ++KAYGA LLSS GEL + L+D+P+  P EP  TSV
Sbjct: 309 DEWVEKLATLYWFTVEFGLCRQEGEVKAYGAGLLSSFGELQYCLTDEPKKYPLEPEKTSV 368

Query: 181 QPYQDQEYQPIYYVAETFEDAKDKL 255
           Q Y   +YQP+Y++A++F  A++K+
Sbjct: 369 QKYPITQYQPVYFIADSFLSARNKV 393


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 376 RCCISPTPLRS-SRAHTSSDLLTFTVHNSGSVHAALP 483
           RC ++P   RS S A  +SDL   T   SGS    LP
Sbjct: 88  RCTVAPNRCRSTSAASITSDLTILTAPQSGSSRILLP 124


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 306 HTERVEVLDSVDKLETLIWQLNTEMLHLTNAVKKLKGSHFE*SPYLYSTQQWFSA 470
           H E   +L  VDK E L  Q+    L++     K+K + FE   Y Y ++  FSA
Sbjct: 554 HEEFSLILSEVDKFEALKLQIRQNDLNILYETYKMKFTEFE-RRYPYYSRFRFSA 607


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 706 NPRNVQLFLRKMGQFGKSVYFPEP-QANELGQNNTTIRYKKRIQRSTIGWLSHLFTHVPR 530
           N + V   +RK G   + +Y     + +E G +N     K+ I++  IG++     H PR
Sbjct: 69  NEKEVGSAVRKSGLKREDIYVTTKLKPSEEGHSNALKYAKESIKKLDIGYVDLFLIHTPR 128

Query: 529 TPTTVLHYN 503
               +  Y+
Sbjct: 129 PGNIIAAYD 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,290,800
Number of Sequences: 59808
Number of extensions: 573381
Number of successful extensions: 1547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)