Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30798
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...   137   1e-34
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score =  137 bits (332), Expect = 1e-34
 Identities = 64/85 (75%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   DSEIEKLSTVYWFTVEFGLCKENQQLKAYGAALLSSIGELLHAL-SDKPELRPFEPASTS 177
           D EIEKLST+YWFTVEFGLCKE   +KAYGA LLS+ GELLHAL S K E RPFEP ST+
Sbjct: 368 DEEIEKLSTIYWFTVEFGLCKEGPDVKAYGAGLLSAYGELLHALTSGKCEHRPFEPKSTA 427

Query: 178 VQPYQDQEYQPIYYVAETFEDAKDK 252
           VQ YQDQ+YQPIY+VA++FEDAK+K
Sbjct: 428 VQKYQDQDYQPIYFVADSFEDAKEK 452



 Score = 93.1 bits (221), Expect = 3e-21
 Identities = 41/59 (69%), Positives = 52/59 (88%)
 Frame = +3

Query: 243 QRQIRRWVSTMSRPFEVRFNPHTERVEVLDSVDKLETLIWQLNTEMLHLTNAVKKLKGS 419
           + + RRWVSTMSRPFEVR++P+T+RVE+LDSVD+L+ L+ Q+NTEM HLTNAV KLK S
Sbjct: 450 KEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVDRLDNLMAQVNTEMTHLTNAVNKLKTS 508


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 172 TSVQPYQDQEYQPIYYVAETFEDAKDKLDAGCQPCRDRSKCASTL 306
           T+     D +  P  Y  ET  D    +    +PCR  ++C + L
Sbjct: 445 TAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPEPCRCHARCIARL 489


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 172 TSVQPYQDQEYQPIYYVAETFEDAKDKLDAGCQPCRDRSKCASTL 306
           T+     D +  P  Y  ET  D    +    +PCR  ++C + L
Sbjct: 445 TAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPEPCRCHARCIARL 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,144
Number of Sequences: 438
Number of extensions: 5595
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)