Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30798
(829 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41460.1 68415.m05122 apurinic endonuclease-redox protein / D... 31 0.93
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 30 1.6
At2g39180.1 68415.m04812 protein kinase family protein contains ... 29 3.8
At1g59500.1 68414.m06680 auxin-responsive GH3 family protein sim... 29 3.8
At5g09440.1 68418.m01093 phosphate-responsive protein, putative ... 29 5.0
At2g14960.1 68415.m01701 auxin-responsive GH3 family protein sim... 29 5.0
At5g18450.1 68418.m02173 AP2 domain-containing transcription fac... 28 6.6
At4g37390.1 68417.m05294 auxin-responsive GH3 family protein sim... 28 8.7
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t... 28 8.7
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 28 8.7
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 28 8.7
At1g27670.1 68414.m03382 expressed protein 28 8.7
>At2g41460.1 68415.m05122 apurinic endonuclease-redox protein /
DNA-(apurinic or apyrimidinic site) lyase identical to
apurinic endonuclease-redox protein SP: P45951 from
[Arabidopsis thaliana]
Length = 536
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 774 PHFLPLGNLKLKILIPNINGLKGIPAMYNFSSVKWGNSEN 655
P LP G +K++ N+NGL+G+ +FS+++ EN
Sbjct: 266 PPPLPEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQREN 305
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +1
Query: 235 EDAKDKLDAGCQPCRDRSKCASTLTQSA*RCSTPLISWKLSSGSSTPRCCISPTPLRSSR 414
ED D +D C P R ++K S+ + RC+ P S SSG S IS R
Sbjct: 303 EDDDDFVD-DCLPARKKAKTKSSRPRPRRRCTVPSDSDVASSGESDYEYTISEEEREQIR 361
Query: 415 AHTSSDLLTFTVHNSGSV 468
+ LL +V+++ S+
Sbjct: 362 --EAGSLLKSSVNHASSI 377
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 593 VPYCSIILPQLICLGLRKVHRFSELPHFT 679
VP+ S++LP + LG K+ R SEL T
Sbjct: 488 VPHQSVLLPTAVSLGETKIFRLSELKDAT 516
>At1g59500.1 68414.m06680 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 597
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 563 SDGTSLNSFFVPYCSIILPQLICLGLRKV--HRFSELPHFTEEK 688
S G+S+N + VP C + P + L R V H LPH++ E+
Sbjct: 552 SRGSSINQYKVPRCVSLTPIMKLLDSRVVSAHFSPSLPHWSPER 595
>At5g09440.1 68418.m01093 phosphate-responsive protein, putative
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 278
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 432 SPYLYSTQQWFSARGLAHSV*LVIL*CKTVVGVRGTCVNKCDNH 563
SPYL + +A G A S+ V+L K V V G C+N+C H
Sbjct: 108 SPYLRALSSKLNAGG-ARSI-TVVLTAKDVT-VEGLCMNRCGTH 148
>At2g14960.1 68415.m01701 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 590
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 563 SDGTSLNSFFVPYCSIILPQLICLGLRKV--HRFSELPHFTEEK 688
S G S+N + VP C P + L R V H LPH+T E+
Sbjct: 544 SRGASINQYKVPRCVNFTPIVELLDSRVVSAHFSPSLPHWTPER 587
>At5g18450.1 68418.m02173 AP2 domain-containing transcription
factor, putative DREB2A, Arabidopsis thaliana,
EMBL:AB007790
Length = 307
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 669 GNSENL-CTFRSPRQMSWGKIILQ 601
G EN CTFR RQ +WGK + +
Sbjct: 25 GGPENATCTFRGVRQRTWGKWVAE 48
>At4g37390.1 68417.m05294 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 603
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 563 SDGTSLNSFFVPYCSIILPQLICLGLRKV--HRFSELPHFTEEK 688
S G S+N + VP C P + L R V H LPH++ E+
Sbjct: 558 SRGASINQYKVPRCVSFTPIMELLDSRVVSAHFSPSLPHWSPER 601
>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
SP|P42497 Phytochrome D {Arabidopsis thaliana}
Length = 1164
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 597 GTKKEFNEVPSDGYHTCSHTFHARQQQSYTIISLAIQNGQGRVH 466
G+K E S G+ HT A Q QS +L QN Q + H
Sbjct: 6 GSKTSGGEAASSGHRRSRHTSAAEQAQSSANKALRSQNQQPQNH 49
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 121 LHALSDKPELRPFEPASTSVQPYQDQEYQPIYYVAETFEDAKDKLDAGCQ 270
+H+LS E EP+ V Q+ E ++ A+ D KLD GC+
Sbjct: 1170 VHSLSVDNE-ETIEPSYVIVDHEQELELSGMHDAADNQNDGPHKLDEGCE 1218
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 52 GLCKENQQLKAYGAALLSSIGELLH 126
G+ EN++LKA A+ L I ELLH
Sbjct: 1056 GVFHENEELKAKEASSLKKIDELLH 1080
>At1g27670.1 68414.m03382 expressed protein
Length = 232
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 64 ENQQLKAYGAALLSSIGELLHALSDKPELRPFEPASTSVQPYQDQEYQ 207
E + L+ +SS+GE HA+ K E+ PA+T Q Y+
Sbjct: 132 EARPLRREMVRAVSSVGETAHAIRRKQEMTFLPPATTESTATDHQVYR 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,297
Number of Sequences: 28952
Number of extensions: 392127
Number of successful extensions: 1102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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