Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30796
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 2.4
10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753 29 3.1
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 3.1
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 29 3.1
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 4.1
04_04_0512 + 25806599-25808080 29 4.1
04_01_0471 + 6099768-6100094,6100384-6100416 29 4.1
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 4.1
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 29 5.4
12_02_1265 - 27435096-27437675 28 7.2
09_04_0375 - 17055024-17055956,17056045-17056296 28 7.2
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 28 9.5
08_01_0397 - 3509186-3510291,3510322-3512335 28 9.5
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 28 9.5
02_03_0167 - 15923872-15925683 28 9.5
02_03_0131 - 15576422-15577021 28 9.5
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 2.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 116 WEDTAWPWPSSITPPWQIAK 57
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753
Length = 434
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 168 PSIESCCSSTDSRSPFDSTCRSYCSRRPREHSSYIHAS 281
P++ SCCSS+ +S+ S R+ R HS Y S
Sbjct: 107 PAVASCCSSSSDSETSESS-NSTGGRKSRSHSDYSEIS 143
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 358 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 456
TP M+ + P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 309 AQG*SVGLLAKHVYTKNVHGGGVNNRTGMLNQRGCVSQYWSSMTQYWGIMC 157
AQG SV L+ ++V GG+N G+L RG ++ + + + + WG C
Sbjct: 433 AQGKSVILVRTETSPEDV--GGMNAAAGILTARGGMTSHAAVVARGWGKCC 481
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 113 EDTAWPWPSSITPPWQIAKIEQTTAIL 33
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 339 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 479
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 48 LLDFGYLPRWCYRRGPRPC-CVFPKHR 125
+L+F +LPR RRG R C V P H+
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHHK 93
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 420 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 328
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 13 RHLNMFFKIAVVCSILAICQGGVI 84
RH+ + + A VC +A+C+GG +
Sbjct: 22 RHVQILKRSAAVCGAVAVCRGGAV 45
>12_02_1265 - 27435096-27437675
Length = 859
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 255 HGGGVNNRTGMLNQRGCVSQYWSSMTQY-WGIMCRCLMRRLVMANDALGRHSMAVALVYN 79
HGGG + L V QY+ ++ Q WG M ++ L DA + + + L+++
Sbjct: 287 HGGGPQSNLRSLKSLRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAF-QANQVLKLLHD 345
Query: 78 TTLA 67
T+A
Sbjct: 346 HTIA 349
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 REHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHV-EDHAPAKYEFSYSVEDPH 425
R+ SS ASP F H P+ HH + A H V +D A + PH
Sbjct: 115 RKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPH 173
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 487 LYSSLMVHPQGRIHS*PPQRIQRYCT 564
L+++ V+PQG IHS P Q++Q CT
Sbjct: 836 LWATAEVNPQG-IHSHPNQQLQHTCT 860
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 474 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 316
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 210 PFDSTCRSYCSRRPREHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDH 380
P S +YCS S Y H V + V P H + P++ E+ H+ED+
Sbjct: 10 PAGSGKSTYCS------SLYQHCETVGRTIHMVNLDPAAEHFSYPVSTENHRHLEDN 60
>02_03_0167 - 15923872-15925683
Length = 603
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 431 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 309
AG+ +L+ + +++RGS + +FDG N+SVV W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 450 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 322
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,257,146
Number of Sequences: 37544
Number of extensions: 533999
Number of successful extensions: 1850
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -