Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30796
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    36   0.040
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    31   0.85 
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    31   1.1  
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    29   3.4  
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,...    28   6.0  
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    28   7.9  
At5g31873.1 68418.m03777 hypothetical protein                          28   7.9  
At5g28120.1 68418.m03396 hypothetical protein                          28   7.9  
At5g28110.1 68418.m03395 hypothetical protein                          28   7.9  
At3g30816.1 68416.m03949 hypothetical protein                          28   7.9  

>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 124 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAA 249
           VRH  P     +H +P +SH++P  + ++P + H+ P+V A+
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 573 SELCTIALNPLWWSAVYSTLRMNHQAGVESIRLSRHHHH 457
           ++LC   + P+++  VYS ++ +     E  +LSR  HH
Sbjct: 668 NKLCQACITPIYFGNVYSCMQCDFSLHEECAKLSRKTHH 706


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +1

Query: 343 QLPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 459
           Q P+ +   S++  P S S+  PS+ PTP +      +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
 Frame = +3

Query: 135 RAFSSSNGTLYPSIESC--CSSTDSRSPFDSTCRSYCSRRPREHSSYIHASPVVQHFSPV 308
           R  +  N   +P    C  CS   S   F ST  +Y   +      Y     V  HF P 
Sbjct: 183 RFLNCLNSLWHPECFRCYGCSQPISEYEF-STSGNYPFHKACYRERYHPKCDVCSHFIPT 241

Query: 309 QHAPVVHHAAIPIAVEH--SDHVEDHAP 386
            HA ++ + A P  V+     H  D  P
Sbjct: 242 NHAGLIEYRAHPFWVQKYCPSHEHDATP 269


>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
           putative contains Pfam profiles PF00005: ABC
           transporter, PF00664: ABC transporter transmembrane
           region
          Length = 1488

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 134 SWRTMLWEDTAWPWPSSITPPWQIAKIEQTTAILKNMLRCLTE 6
           SW T L +   +  P +    WQ+ + +QT  ++K   RC TE
Sbjct: 241 SWMTPLMQ-LGYRKPITERDVWQLDQWDQTETLIKRFQRCWTE 282


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +3

Query: 93  PRPCCVFPKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTC-RSYCSRRPREHSSY 269
           P  CC  PK      A SS+N      I++   S  S  PF  T  ++     P E+ +Y
Sbjct: 526 PDSCCQEPKEEVFHSAESSNNEDSSAMIDA-LGSPQSEKPFAETSQQTEPESCPTENKAY 584

Query: 270 IHAS--PVVQHFSPVQHAPVVHHAAI 341
           I  S  P  +   P +  P    A+I
Sbjct: 585 IDKSEKPFAETSQPKEPKPFADRASI 610


>At5g31873.1 68418.m03777 hypothetical protein 
          Length = 271

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,135
Number of Sequences: 28952
Number of extensions: 392968
Number of successful extensions: 1452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)