Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30794
(730 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71; Eukaryo... 138 1e-31
UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellul... 130 5e-29
UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep: ... 123 5e-27
UniRef50_Q41960 Cluster: 60S ribosomal protein KD4/L2; n=3; Euka... 111 2e-23
UniRef50_Q5BZD1 Cluster: SJCHGC07017 protein; n=1; Schistosoma j... 109 5e-23
UniRef50_Q3T1K8 Cluster: Rpl8 protein; n=8; Coelomata|Rep: Rpl8 ... 79 8e-14
UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17; Euryar... 49 1e-04
UniRef50_O15574 Cluster: 60S ribosomal protein L8; n=1; Entamoeb... 43 0.007
UniRef50_A7R935 Cluster: Chromosome undetermined scaffold_3264, ... 43 0.009
UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10; Archae... 42 0.012
UniRef50_Q8ZYF5 Cluster: 50S ribosomal protein L2P; n=6; Thermop... 39 0.14
UniRef50_Q9AIG2 Cluster: Ribosomal protein L2; n=4; Bacteria|Rep... 36 0.77
UniRef50_Q6DBV0 Cluster: ElaC homolog 1; n=3; Euteleostomi|Rep: ... 36 1.0
UniRef50_A5WWD1 Cluster: ElaC homolog 1; n=1; Danio rerio|Rep: E... 36 1.0
UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella... 36 1.0
UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2; Crenarchaeot... 36 1.0
UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3; Archaea... 36 1.0
UniRef50_Q1RPH1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.1
UniRef50_UPI0001555715 Cluster: PREDICTED: similar to immunoglob... 33 7.2
UniRef50_UPI0000EBDD47 Cluster: PREDICTED: similar to Na+,K+ ATP... 33 7.2
UniRef50_Q0RJW0 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus N... 33 7.2
UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4; Thermop... 33 7.2
>UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71;
Eukaryota|Rep: 60S ribosomal protein L8 - Drosophila
melanogaster (Fruit fly)
Length = 256
Score = 138 bits (334), Expect = 1e-31
Identities = 69/117 (58%), Positives = 81/117 (69%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60
Query: 203 VHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXXXXXXAMPEGTIVXSI 373
VHFRDPY++K ++ L + +H MPEGTI+ ++
Sbjct: 61 VHFRDPYRYKIRK-ELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNL 116
Score = 40.3 bits (90), Expect = 0.047
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +1
Query: 250 FMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRG 399
F+ P+G RK TL++GNVMP+ G NLEEK GDRG
Sbjct: 76 FIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTII-CNLEEKTGDRG 124
>UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellular
organisms|Rep: 60S ribosomal protein L8 - Homo sapiens
(Human)
Length = 257
Score = 130 bits (313), Expect = 5e-29
Identities = 66/114 (57%), Positives = 75/114 (65%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXXXXXXAMPEGTIV 364
V FRDPY+FK K L + +H MPEGTIV
Sbjct: 61 VVFRDPYRFK-KRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIV 113
>UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep:
Ribosomal protein - Codakia orbicularis
Length = 234
Score = 123 bits (296), Expect = 5e-27
Identities = 54/72 (75%), Positives = 63/72 (87%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR+QRKG GSVF +HTK RKG LR++D+AERHGY+KGVVKDI+HDPGRGAPLA
Sbjct: 1 MGRVIRSQRKGPGSVFKAHTKHRKGKAALRAVDFAERHGYVKGVVKDIVHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTK 238
V FRDPYK+K +
Sbjct: 61 VTFRDPYKYKMR 72
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 237 RKELFHAPEGLYTGQFVYCGKKAN 308
R E F A EG+YTGQF+YCGKKAN
Sbjct: 72 RTETFIATEGMYTGQFIYCGKKAN 95
>UniRef50_Q41960 Cluster: 60S ribosomal protein KD4/L2; n=3;
Eukaryota|Rep: 60S ribosomal protein KD4/L2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 123
Score = 111 bits (267), Expect = 2e-23
Identities = 52/73 (71%), Positives = 60/73 (82%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK AGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKVAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTKE 241
V FR P++FK ++
Sbjct: 61 VTFRHPFRFKKQK 73
>UniRef50_Q5BZD1 Cluster: SJCHGC07017 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07017 protein - Schistosoma
japonicum (Blood fluke)
Length = 112
Score = 109 bits (263), Expect = 5e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +2
Query: 35 IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 214
IR+QRKGAG VF +HTK RKGA +LR +D+AERHGYI+GVVK+IIHDPGRGAPLA V FR
Sbjct: 1 IRSQRKGAGGVFKAHTKHRKGAARLRPVDFAERHGYIRGVVKEIIHDPGRGAPLAKVAFR 60
Query: 215 DPYKFK 232
D Y +K
Sbjct: 61 DVYSYK 66
>UniRef50_Q3T1K8 Cluster: Rpl8 protein; n=8; Coelomata|Rep: Rpl8
protein - Rattus norvegicus (Rat)
Length = 47
Score = 79.4 bits (187), Expect = 8e-14
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVK 160
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VK
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVK 46
>UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17;
Euryarchaeota|Rep: 50S ribosomal protein L2P -
Methanopyrus kandleri
Length = 243
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGAGS-VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MG+ IR QR G G + + + + +G + R D E+ G + G V +++HDP R AP+A
Sbjct: 1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVA 60
Query: 200 VVHFRD 217
V F D
Sbjct: 61 RVRFED 66
>UniRef50_O15574 Cluster: 60S ribosomal protein L8; n=1; Entamoeba
histolytica|Rep: 60S ribosomal protein L8 - Entamoeba
histolytica
Length = 158
Score = 43.2 bits (97), Expect = 0.007
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 146 KGVVKDIIHDPGRGAPLAVVHFRDPYKFKTKEGALSCS 259
+G+VK I HDPGRGAPLA V FR+P ++ + C+
Sbjct: 33 RGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICA 70
Score = 39.5 bits (88), Expect = 0.082
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 240 KELFHAPEGLYTGQFVYCGKKAN 308
KELF EGLY+GQ++YCG KA+
Sbjct: 64 KELFICAEGLYSGQYIYCGSKAS 86
>UniRef50_A7R935 Cluster: Chromosome undetermined scaffold_3264,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3264, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 66
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRK 94
MGRVIRAQRKG GS+F SHT RK
Sbjct: 1 MGRVIRAQRKGVGSIFKSHTHHRK 24
>UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10;
Archaea|Rep: 50S ribosomal protein L2P - Sulfolobus
tokodaii
Length = 238
Score = 42.3 bits (95), Expect = 0.012
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSV-FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MG+ + QR G G + F S + +R G K+ +++ G G V DI+H+PG APLA
Sbjct: 1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLA 55
Query: 200 VVHFRDPYKF 229
++ D KF
Sbjct: 56 LIKLDDGTKF 65
>UniRef50_Q8ZYF5 Cluster: 50S ribosomal protein L2P; n=6;
Thermoproteales|Rep: 50S ribosomal protein L2P -
Pyrobaculum aerophilum
Length = 246
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 23 MGRVIRAQRKG-AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MG+ I QR+G GS F S + KR G + L GY V DI+H+PG AP+A
Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVA 56
Query: 200 VV 205
+
Sbjct: 57 KI 58
>UniRef50_Q9AIG2 Cluster: Ribosomal protein L2; n=4; Bacteria|Rep:
Ribosomal protein L2 - Carsonella ruddii
Length = 235
Score = 36.3 bits (80), Expect = 0.77
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 50 KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYK 226
+ G + V H K K R +D+ IKG+V+ I +DP R A +A++ + D K
Sbjct: 18 RSRGKISVRHIGK-KHKKFYRKIDFKRDKSNIKGIVESIHYDPNRNARIALIKYLDGEK 75
>UniRef50_Q6DBV0 Cluster: ElaC homolog 1; n=3; Euteleostomi|Rep:
ElaC homolog 1 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 372
Score = 35.9 bits (79), Expect = 1.0
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -3
Query: 584 CSITFHLQPTITEPMPSVALNGQKPFGSRTVAFTLVTLSHPGIVVPITVGESFPRRPRCP 405
C+I+ +L P +P P V + G P G R + LS ++ P V E P +CP
Sbjct: 76 CTISLNLNPQPDQPPPCVDIYG--PRGLRLFIRVALQLSGSQLLFPYAVHELQPSDEQCP 133
Query: 404 DE-PLSPIFSS 375
+E LSP ++
Sbjct: 134 EEGRLSPALTT 144
>UniRef50_A5WWD1 Cluster: ElaC homolog 1; n=1; Danio rerio|Rep: ElaC
homolog 1 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 263
Score = 35.9 bits (79), Expect = 1.0
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -3
Query: 584 CSITFHLQPTITEPMPSVALNGQKPFGSRTVAFTLVTLSHPGIVVPITVGESFPRRPRCP 405
C+I+ +L P +P P V + G P G R + LS ++ P V E P +CP
Sbjct: 107 CTISLNLNPQPDQPPPCVDIYG--PRGLRLFIRVALQLSGSQLLFPYAVHELQPSDEQCP 164
Query: 404 DE-PLSPIFSS 375
+E LSP ++
Sbjct: 165 EEGHLSPALTT 175
>UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella
natans|Rep: Ribosomal protein L8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 281
Score = 35.9 bits (79), Expect = 1.0
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MG++I AQRKG + +R G +S+ E++ IKG++ D + P
Sbjct: 27 MGKIISAQRKGKIGFQKQGSSRRIGKISYKSMTNEEKYSVIKGIISKFHIDTVKKVPAIK 86
Query: 203 VHFRDPYKFK 232
+ F FK
Sbjct: 87 IKFNVTKYFK 96
>UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2;
Crenarchaeota|Rep: Ribosomal protein L2 - Cenarchaeum
symbiosum
Length = 243
Score = 35.9 bits (79), Expect = 1.0
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSV-FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MG+ +R+G G + F + T + K + + E+ +G V D++H+ GR APLA
Sbjct: 1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLA 57
Query: 200 VVHFRD 217
+ F D
Sbjct: 58 KIRFED 63
>UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3;
Archaea|Rep: 50S ribosomal protein L2P - Aeropyrum
pernix
Length = 238
Score = 35.9 bits (79), Expect = 1.0
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGAGS-VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MG+ +R QR G G+ + S G K L ++G V ++IHDPGR PLA
Sbjct: 1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLA 56
Query: 200 VVHFRDPYKF 229
V D +F
Sbjct: 57 RVVREDGVEF 66
>UniRef50_Q1RPH1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 894
Score = 34.3 bits (75), Expect = 3.1
Identities = 25/88 (28%), Positives = 38/88 (43%)
Frame = +1
Query: 391 DRGSSGQRGLLGKLSPTVIGTTIPGWLSVTRVKATVLEPKGFWPFKATEGMGSVIVGWRW 570
D+ SG + G LS +VI G L T + P A +G+G + W
Sbjct: 463 DKSISG--AMAGFLSSSVINGRKQGKLVAFSTDTTAANLQAINPLLAVKGLGDTLSTAGW 520
Query: 571 NVIEQNPILKAGRGITTKLTRVQNVNWL 654
+++ + ++ AG GI T T NWL
Sbjct: 521 SLLGGSAVVGAGLGIWTSFT----ANWL 544
>UniRef50_UPI0001555715 Cluster: PREDICTED: similar to
immunoglobulin superfamily, member 2, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
immunoglobulin superfamily, member 2, partial -
Ornithorhynchus anatinus
Length = 770
Score = 33.1 bits (72), Expect = 7.2
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 196 GCCTLPRSI-QVQDQGRSSFMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCN 366
GCC +PRS + +D SS LP QA L +R+ T++ G + V GY CN
Sbjct: 5 GCC-MPRSAAKGKDPRVSSDFLPFPDLQAELGTGQREVTVQRGPLFRVAGYPLSLWCN 61
>UniRef50_UPI0000EBDD47 Cluster: PREDICTED: similar to Na+,K+ ATPase
isoform 1; n=1; Bos taurus|Rep: PREDICTED: similar to
Na+,K+ ATPase isoform 1 - Bos taurus
Length = 1045
Score = 33.1 bits (72), Expect = 7.2
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = -2
Query: 570 PPPANNNRTHALCCLEWPETFWLQNGSFYSCNA*PSRNCCSNHSWRKFSQKATLPRRTSI 391
P PA + R+H CC WP + L S S + +H WR + T R +
Sbjct: 840 PXPATSRRSHPSCCSSWPTSHCLWAPSPSSASTWAPTWSLPSH-WRTRLPRVTSXRDSPG 898
Query: 390 THFL 379
TH L
Sbjct: 899 THAL 902
>UniRef50_Q0RJW0 Cluster: Putative uncharacterized protein; n=1;
Frankia alni ACN14a|Rep: Putative uncharacterized
protein - Frankia alni (strain ACN14a)
Length = 488
Score = 33.1 bits (72), Expect = 7.2
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Frame = -3
Query: 569 HLQPTITEPMPSVALNGQKPFGSRTVAFTLVTLSHPGIVVPITVGESFPRRPRC--PDEP 396
+L+ E P +AL G P +R +A +++L VV PRRP P+
Sbjct: 153 YLRELAEEMRPRLALAGAGPVDTRVLAIAIISLMQWTHVV------LDPRRPGVLPPESS 206
Query: 395 LSPIFSSRLXLQWYPQA*PPTGITFPTSRVCFLSTINKLACVEPFGSMKELLPWS*TCMD 216
+ ++ + +P PTG PT T L P G+ PW +D
Sbjct: 207 VHATLATIIHSSLFPPLAGPTGTAGPTGTAGPTGTAGPLGAAGPVGADGGPPPWPGLLLD 266
>UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L2
- Candidatus Nitrosopumilus maritimus SCM1
Length = 244
Score = 33.1 bits (72), Expect = 7.2
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLR--SLDYAERHGYIKGVVKDIIHDPGRGAPL 196
MG+ +R+G G T K K +E+H +G + D++H+ GR APL
Sbjct: 1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPL 57
Query: 197 AVVHFRD 217
A V F D
Sbjct: 58 AKVRFED 64
>UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L2P -
Thermoplasma volcanium
Length = 234
Score = 33.1 bits (72), Expect = 7.2
Identities = 23/58 (39%), Positives = 31/58 (53%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 196
MG+ I QR+G GS+ V + + ++ L E VVKDIIH PGR +PL
Sbjct: 1 MGKHIIPQRRGHGSL-VYRSPSHRHVVDVKHLKPGEY------VVKDIIHAPGRNSPL 51
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,202,744
Number of Sequences: 1657284
Number of extensions: 18930580
Number of successful extensions: 48675
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 46500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48649
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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