Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30794
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   109   3e-25
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   109   3e-25
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   109   3e-25
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    27   2.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.8  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   6.3  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.3  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.4  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   8.4  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  109 bits (263), Expect = 3e-25
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKT 235
           V FR+PY ++T
Sbjct: 60  VAFRNPYHYRT 70



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +3

Query: 243 ELFHAPEGLYTGQFVYCGKKA 305
           E F A EG+YTGQFVYCGK A
Sbjct: 73  ETFVATEGMYTGQFVYCGKNA 93



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 39/121 (32%), Positives = 54/121 (44%)
 Frame = +1

Query: 247 SFMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRGSSGQRGLLG 426
           +F+  +G          +   L VGNV+PVG    G   + N+EEK GDRG+ G+    G
Sbjct: 74  TFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIIS-NVEEKAGDRGALGRSS--G 130

Query: 427 KLSPTVIGTTIPGWLSVTRVKATVLEPKGFWPFKATEGMGSVIVGWRWNVIEQNPILKAG 606
                ++G  +      TRVK      K   P  A   +G V  G R +     P+LKAG
Sbjct: 131 NY-VIIVGHDVD--TGKTRVKLP-SGAKKVVPSSARGVVGIVAGGGRID----KPLLKAG 182

Query: 607 R 609
           R
Sbjct: 183 R 183


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  109 bits (263), Expect = 3e-25
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKT 235
           V FR+PY ++T
Sbjct: 60  VAFRNPYHYRT 70



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +3

Query: 243 ELFHAPEGLYTGQFVYCGKKA 305
           E F A EG+YTGQFVYCGK A
Sbjct: 73  ETFVATEGMYTGQFVYCGKNA 93



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 39/121 (32%), Positives = 54/121 (44%)
 Frame = +1

Query: 247 SFMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRGSSGQRGLLG 426
           +F+  +G          +   L VGNV+PVG    G   + N+EEK GDRG+ G+    G
Sbjct: 74  TFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIIS-NVEEKAGDRGALGRSS--G 130

Query: 427 KLSPTVIGTTIPGWLSVTRVKATVLEPKGFWPFKATEGMGSVIVGWRWNVIEQNPILKAG 606
                ++G  +      TRVK      K   P  A   +G V  G R +     P+LKAG
Sbjct: 131 NY-VIIVGHDVD--TGKTRVKLP-SGAKKVVPSSARGVVGIVAGGGRID----KPLLKAG 182

Query: 607 R 609
           R
Sbjct: 183 R 183


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  109 bits (263), Expect = 3e-25
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKT 235
           V FR+PY ++T
Sbjct: 60  VAFRNPYHYRT 70



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +3

Query: 243 ELFHAPEGLYTGQFVYCGKKA 305
           E F A EG+YTGQFVYCGK A
Sbjct: 73  ETFVATEGMYTGQFVYCGKNA 93



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 39/121 (32%), Positives = 54/121 (44%)
 Frame = +1

Query: 247 SFMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRGSSGQRGLLG 426
           +F+  +G          +   L VGNV+PVG    G   + N+EEK GDRG+ G+    G
Sbjct: 74  TFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIIS-NVEEKAGDRGALGRSS--G 130

Query: 427 KLSPTVIGTTIPGWLSVTRVKATVLEPKGFWPFKATEGMGSVIVGWRWNVIEQNPILKAG 606
                ++G  +      TRVK      K   P  A   +G V  G R +     P+LKAG
Sbjct: 131 NY-VIIVGHDVD--TGKTRVKLP-SGAKKVVPSSARGVVGIVAGGGRID----KPLLKAG 182

Query: 607 R 609
           R
Sbjct: 183 R 183


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 575 TFHLQPTITEPMPSVALNGQKPFGSRTVAFTL 480
           T++L   I+ P P+ AL   +PF S  ++F L
Sbjct: 4   TYYLNTVISNPRPAQALGINQPFVSAYLSFVL 35


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 300 SFHNKQIGLCRALREHERAPSLVLNLYGSR 211
           S  N Q+ +    R H++AP+L+ NL   R
Sbjct: 472 SLSNDQLSVKEKRRHHKKAPTLIQNLNSPR 501


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 433 SPTVIGTTIPGWLSVTRVKATVLEPKG 513
           SP ++G  +P + S+T     VL P G
Sbjct: 204 SPAMVGPGVPFYSSITGANGNVLAPSG 230


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 355 YHCNXNLEEKMGDRGSSGQRGLLGKLSPTVIGTTIPGWLSVT 480
           +HCN ++    G+     +  ++  LS     +T  GWL++T
Sbjct: 281 FHCNIHVHSVSGNAIRKSRNPIIQDLSSICQNSTEFGWLALT 322


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -2

Query: 549 RTHALCCLEWPETFWLQNGSFYSCNA*PSRNCCSNHSWRKFSQKATLPRRTSITHFLFKI 370
           R  +L  LE+PE FWL+  +  S  A      C   ++     K  +P    +T+++ + 
Sbjct: 289 RVDSLSQLEFPEQFWLELTAESSLLARTFNEICIEKNYTDLLDK--MPEVVQLTYYIERQ 346

Query: 369 XITM 358
            +++
Sbjct: 347 YVSL 350


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 447 WN-NNSWMAKRYKSKSYRSGAKRFLAIQGNRGHGFGY 554
           WN ++ W+ + ++      GA+  +  Q  R  G+GY
Sbjct: 272 WNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 189 HLWLLYTSAIHTSSRPRKELFHAPEGLYTGQFVY--CGKKANS*SWKCDA 332
           HL  + TS I  S R  ++  H P  L TG + Y  C K+     W  DA
Sbjct: 182 HLIKILTSLIEESKRNAEKFSHVP--LNTGHWKYKKCDKRMPQ-EWLADA 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,306
Number of Sequences: 5004
Number of extensions: 74375
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)