Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30794
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      114   8e-26
06_01_1168 - 9949128-9950621                                           30   2.2  
05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320           29   3.8  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    29   3.8  
07_03_0079 + 13169773-13170861                                         28   8.7  
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417...    28   8.7  
02_05_1252 + 35261135-35261935                                         28   8.7  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  114 bits (274), Expect = 8e-26
 Identities = 52/70 (74%), Positives = 59/70 (84%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 203 VHFRDPYKFK 232
           V FR P+++K
Sbjct: 61  VTFRHPFRYK 70



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 237 RKELFHAPEGLYTGQFVYCGKKA 305
           +KELF A EG+YTGQFVYCG++A
Sbjct: 72  QKELFVAAEGMYTGQFVYCGRRA 94



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 250 FMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRG 399
           F+  +G          R+ TL +GNV+P+     G     N+E  +GDRG
Sbjct: 76  FVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEG-AVVCNVEHHVGDRG 124


>06_01_1168 - 9949128-9950621
          Length = 497

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 490 ATVLEPKGFWPFKATEGMGSVIVGW 564
           AT+L P+GF       G G+VI+GW
Sbjct: 334 ATLLLPEGFEERSTASGRGTVIIGW 358


>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
          Length = 251

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 484 VKATVLEPK----GFWPFKATEGMGS-VIVGWRWNVIEQNPILKAGRGITTKLTRVQNVN 648
           V AT+L+P+    GF P      +G+  I G  ++    NP    G  + T +     + 
Sbjct: 159 VYATILDPRSSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIY 218

Query: 649 WLGPL 663
           WLGPL
Sbjct: 219 WLGPL 223


>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 399 FVWATWPSGKTFANCDWNNNSWMAKRYKSKSYRSGAKRFLAIQGNRG 539
           +VWA W S  T+A   +++N   + R+  K    G +  +A+  N G
Sbjct: 737 WVWAYWCSPLTYAYIAFSSNEMHSPRWMDKFVPDGKRLGVAVLENSG 783


>07_03_0079 + 13169773-13170861
          Length = 362

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 512 PFGSRTVAFTLVTLSHPGIVVPITVGESFPRRPRCPDEPLSPIFSSRLXLQ 360
           P G        +TL+ P  +     G+ +PR   C  +P SP+FS +  +Q
Sbjct: 156 PVGRLVYIALQLTLAWPLYLAFNLSGQPYPRLVTCHYDPYSPLFSDQERVQ 206


>03_01_0563 +
           4169144-4169516,4170362-4170648,4171339-4171576,
           4172473-4172796,4172914-4172999,4173124-4173231,
           4173315-4173619,4173733-4173960,4174109-4174877
          Length = 905

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 530 ALNGQKPFGSRTVAFTLVTLSHPGIVVPITVGESFPRRPRCPDEPLSPIFSSRLXLQW 357
           A++G+K + +RT+ F     +   I + +++  + P  PR P + L+P + +     W
Sbjct: 497 AIDGRKAYATRTIFFLTEAGTLKPIAIELSLPPAKPGEPR-PSKVLTPPYDATSNWLW 553


>02_05_1252 + 35261135-35261935
          Length = 266

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 728 PPTRGGMPSNRGFPWGKHPR 669
           PP+ G      GFPW  HPR
Sbjct: 244 PPSNGLGGGGDGFPWAAHPR 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,784,993
Number of Sequences: 37544
Number of extensions: 536522
Number of successful extensions: 1298
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)