Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30794
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   9e-31
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        61   1e-09
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_47050| Best HMM Match : FATC (HMM E-Value=6.2)                      29   5.1  
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)            28   8.9  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  130 bits (315), Expect = 9e-31
 Identities = 66/117 (56%), Positives = 77/117 (65%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXXXXXXAMPEGTIVXSI 373
           V FRDPY++K ++  L  +   ++                       MPEGTI+ S+
Sbjct: 61  VVFRDPYRYKLRK-ELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSV 116


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 32/75 (42%), Positives = 42/75 (56%)
 Frame = +2

Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXX 328
           GVVK+IIHDPGRGAPLAVV FRDPY++K ++  L  +   ++                  
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRK-ELFVATEGMYTGQFIYCGKKAALQIGNC 59

Query: 329 XXXXAMPEGTIVXSI 373
                MPEGTI+ S+
Sbjct: 60  LPVGIMPEGTIISSV 74


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 138 DTSRELLRI*SMTLVEVHLWLLYT-SAIHTSSRPRKELFHAPEGLYTGQFVYCG 296
           DT +E+ R+ S+T     L L Y  S +    R RK+L      L   + +YCG
Sbjct: 502 DTRQEITRMWSVTRTIAFLQLQYNLSEVRKKERRRKDLVQLLTELQQNRVLYCG 555


>SB_47050| Best HMM Match : FATC (HMM E-Value=6.2)
          Length = 85

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 585 KPYFESWKGHYHKVNKGSK 641
           KPY++ W GH+ KV   S+
Sbjct: 27  KPYWQEWNGHFGKVTTSSQ 45


>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 360 MVPSGIASNRHHISNFKSLLSFHNKQIGLCRALREHERAPSLVLNLYGSRKCTTAKGAP 184
           ++PS +  ++  +SN ++LLS H     L R L E    P+  L+      C  A  +P
Sbjct: 276 LIPSALHMSKEKLSNKRALLSQHFVLSVLSRCLTEEGFWPTDALSCLLQTCCVPASSSP 334


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 597 ESWKGHYHKVNKGSKRKLAGP--IMLTWVFAPWKPPVRRHSSTGGW 728
           E+ + H H  N  +  +  G   + L W F PW   +  ++S  GW
Sbjct: 165 EAIREHVHDGNVRTLLQKLGQSRVFLLWKFLPWLDSIISNASNSGW 210


>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
          Length = 493

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 576 NVPPPANNNRTHALCCLEWPETFWLQNG 493
           N PPP +  +TH   CL W   ++ +NG
Sbjct: 334 NTPPPLDYVQTHRRACLAW---YYYENG 358


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = -2

Query: 456 CCSN-HSWRKFSQKATLPRRTSITHFLFKIXITMVPSGIASNRHHISNFKSLLSFHNKQI 280
           CC++ H ++++    T  + +  + F F +      SG+ S  ++     + LS+ +K +
Sbjct: 80  CCNDFHYFKRYQCTITSYQSSWRSKFSFSVPSGYYLSGLTSVNNNYYENNNELSYTSKTL 139

Query: 279 GLCRALREHER-APSLVLNLYGSRKC 205
           GL  A++   R   +LV + +  R C
Sbjct: 140 GLRAAIKAPSRKGQTLVSSRHLVRSC 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,392,698
Number of Sequences: 59808
Number of extensions: 585051
Number of successful extensions: 1413
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)