BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30794 (730 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 9e-31 SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 61 1e-09 SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_47050| Best HMM Match : FATC (HMM E-Value=6.2) 29 5.1 SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9) 28 8.9 SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 >SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 260 Score = 130 bits (315), Expect = 9e-31 Identities = 66/117 (56%), Positives = 77/117 (65%) Frame = +2 Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202 MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60 Query: 203 VHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXXXXXXAMPEGTIVXSI 373 V FRDPY++K ++ L + ++ MPEGTI+ S+ Sbjct: 61 VVFRDPYRYKLRK-ELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSV 116 >SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) Length = 123 Score = 60.9 bits (141), Expect = 1e-09 Identities = 32/75 (42%), Positives = 42/75 (56%) Frame = +2 Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXX 328 GVVK+IIHDPGRGAPLAVV FRDPY++K ++ L + ++ Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRK-ELFVATEGMYTGQFIYCGKKAALQIGNC 59 Query: 329 XXXXAMPEGTIVXSI 373 MPEGTI+ S+ Sbjct: 60 LPVGIMPEGTIISSV 74 >SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2028 Score = 29.9 bits (64), Expect = 2.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +3 Query: 138 DTSRELLRI*SMTLVEVHLWLLYT-SAIHTSSRPRKELFHAPEGLYTGQFVYCG 296 DT +E+ R+ S+T L L Y S + R RK+L L + +YCG Sbjct: 502 DTRQEITRMWSVTRTIAFLQLQYNLSEVRKKERRRKDLVQLLTELQQNRVLYCG 555 >SB_47050| Best HMM Match : FATC (HMM E-Value=6.2) Length = 85 Score = 28.7 bits (61), Expect = 5.1 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 585 KPYFESWKGHYHKVNKGSK 641 KPY++ W GH+ KV S+ Sbjct: 27 KPYWQEWNGHFGKVTTSSQ 45 >SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 753 Score = 28.7 bits (61), Expect = 5.1 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -2 Query: 360 MVPSGIASNRHHISNFKSLLSFHNKQIGLCRALREHERAPSLVLNLYGSRKCTTAKGAP 184 ++PS + ++ +SN ++LLS H L R L E P+ L+ C A +P Sbjct: 276 LIPSALHMSKEKLSNKRALLSQHFVLSVLSRCLTEEGFWPTDALSCLLQTCCVPASSSP 334 >SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 450 Score = 27.9 bits (59), Expect = 8.9 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +3 Query: 597 ESWKGHYHKVNKGSKRKLAGP--IMLTWVFAPWKPPVRRHSSTGGW 728 E+ + H H N + + G + L W F PW + ++S GW Sbjct: 165 EAIREHVHDGNVRTLLQKLGQSRVFLLWKFLPWLDSIISNASNSGW 210 >SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9) Length = 493 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 576 NVPPPANNNRTHALCCLEWPETFWLQNG 493 N PPP + +TH CL W ++ +NG Sbjct: 334 NTPPPLDYVQTHRRACLAW---YYYENG 358 >SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 684 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Frame = -2 Query: 456 CCSN-HSWRKFSQKATLPRRTSITHFLFKIXITMVPSGIASNRHHISNFKSLLSFHNKQI 280 CC++ H ++++ T + + + F F + SG+ S ++ + LS+ +K + Sbjct: 80 CCNDFHYFKRYQCTITSYQSSWRSKFSFSVPSGYYLSGLTSVNNNYYENNNELSYTSKTL 139 Query: 279 GLCRALREHER-APSLVLNLYGSRKC 205 GL A++ R +LV + + R C Sbjct: 140 GLRAAIKAPSRKGQTLVSSRHLVRSC 165 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,392,698 Number of Sequences: 59808 Number of extensions: 585051 Number of successful extensions: 1413 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1279 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1405 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -