Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30794
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             115   3e-26
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   115   4e-26
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   108   3e-24
At4g18150.1 68417.m02697 hypothetical protein                          31   0.59 
At3g07220.1 68416.m00861 transcriptional activator, putative sim...    30   1.8  
At1g29550.1 68414.m03614 eukaryotic translation initiation facto...    29   4.2  
At4g24790.1 68417.m03550 expressed protein ; expression supporte...    28   7.3  
At2g32650.2 68415.m03989 expressed protein contains Pfam PF05899...    27   9.6  
At2g32650.1 68415.m03988 expressed protein contains Pfam PF05899...    27   9.6  
At2g32180.1 68415.m03933 expressed protein                             27   9.6  
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ...    27   9.6  

>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  115 bits (277), Expect = 3e-26
 Identities = 59/117 (50%), Positives = 74/117 (63%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 203 VHFRDPYKFKTKEGALSCSRRALHRPICXXXXXXXXXXXXXXXXXXAMPEGTIVXSI 373
           V FR P++FK K+  L  +   ++                      ++PEG +V ++
Sbjct: 61  VTFRHPFRFK-KQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNV 116


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  115 bits (276), Expect = 4e-26
 Identities = 53/73 (72%), Positives = 61/73 (83%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 203 VHFRDPYKFKTKE 241
           V FR P++FK ++
Sbjct: 61  VAFRHPFRFKKQK 73



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +3

Query: 231 RPRKELFHAPEGLYTGQFVYCGKKA 305
           + +KELF A EG+YTGQF+YCGKKA
Sbjct: 70  KKQKELFVAAEGMYTGQFLYCGKKA 94



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 250 FMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRG 399
           F+  +G          +K TL VGNV+P+     G     N+E  +GDRG
Sbjct: 76  FVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEG-AVICNVEHHVGDRG 124


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  108 bits (260), Expect = 3e-24
 Identities = 54/75 (72%), Positives = 61/75 (81%), Gaps = 2/75 (2%)
 Frame = +2

Query: 23  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 200 VVHFRDPYKF-KTKE 241
            V FR P+++ K KE
Sbjct: 61  RVAFRHPFRYMKQKE 75



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = +3

Query: 237 RKELFHAPEGLYTGQFVYCGKKAN 308
           +KELF A EG+YTGQ++YCGKKAN
Sbjct: 73  QKELFVAAEGMYTGQYLYCGKKAN 96



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 250 FMLPKGSTQANLFIVERKQTLEVGNVMPVGGYA*GYHCNXNLEEKMGDRGS 402
           F+  +G          +K  L VGNV+P+G    G     N+E  +GDRG+
Sbjct: 77  FVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEG-AVICNVELHVGDRGA 126


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 363 TMVPSGIASNRHHISNFKSLLSFHNKQIGLCRALREHERAPSLVLNLYGSRKCTTAK 193
           T++PSGI   R    ++    + +N +I +  ALR    +P   +   G +  T A+
Sbjct: 491 TLLPSGIQDGRESNLHYSPFTTLYNTEISMAEALRAASISPQNAIPSAGQQAATLAQ 547


>At3g07220.1 68416.m00861 transcriptional activator, putative
           similar to transcriptional activator FHA1 [Nicotiana
           tabacum] gi|15705932|gb|AAL05884
          Length = 320

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 384 FLFKIXITMVPSGIASNRHHISNFKSLLSFHNKQIG 277
           F F + +  +  G    RHH+S   S++ +HN Q G
Sbjct: 111 FYFLLPVRSILGGPLGPRHHVSGQTSVVPYHNYQSG 146


>At1g29550.1 68414.m03614 eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative similar to SP|O23252
           Eukaryotic translation initiation factor 4E (eIF-4E)
           (eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01652: Eukaryotic initiation
           factor 4E
          Length = 240

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 351 SGIASNRHHISNFKSLLSFHNKQIGLCRALREHERAPSLVLNLYGSRKCTTA--KGAPLP 178
           SGI ++++   N  +  S   K +   +A+   E+APS     Y S+K TT   K     
Sbjct: 9   SGIMADQNIDPNTTTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQ 68

Query: 177 GSWIISLTTP 148
            SW      P
Sbjct: 69  NSWTFWFDNP 78


>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 525 QGNRGHGFGYCWLEVERY 578
           Q NRG G  YCW    RY
Sbjct: 187 QSNRGCGITYCWSRTPRY 204


>At2g32650.2 68415.m03989 expressed protein contains Pfam PF05899:
           Protein of unknown function (DUF861)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 405 WATWPSGKTFANCDWNNNSWM-AKRYKSKSYRSGAKRFLAIQGNRGHGFGY-CWLEVERY 578
           W+ W +GK     DW  +  +  ++ + +    G+KR++  Q   G    Y  WLE + +
Sbjct: 65  WSVWKTGKCKLPWDWQVDQLVYIEQGEVRVVPEGSKRYM--QFLAGDLVRYPKWLEADLF 122

Query: 579 *TKPYFESW 605
              PY E +
Sbjct: 123 FNAPYIERY 131


>At2g32650.1 68415.m03988 expressed protein contains Pfam PF05899:
           Protein of unknown function (DUF861)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 405 WATWPSGKTFANCDWNNNSWM-AKRYKSKSYRSGAKRFLAIQGNRGHGFGY-CWLEVERY 578
           W+ W +GK     DW  +  +  ++ + +    G+KR++  Q   G    Y  WLE + +
Sbjct: 65  WSVWKTGKCKLPWDWQVDQLVYIEQGEVRVVPEGSKRYM--QFLAGDLVRYPKWLEADLF 122

Query: 579 *TKPYFESW 605
              PY E +
Sbjct: 123 FNAPYIERY 131


>At2g32180.1 68415.m03933 expressed protein 
          Length = 139

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 405 WATWPSGKTFANCDWNNNSWM-AKRYKSKSYRSGAKRFLAIQGNRGHGFGY-CWLEVERY 578
           W+ W +GK     DW  +  +  ++ + +    G+KR++  Q   G    Y  WLE + +
Sbjct: 65  WSVWKTGKCKLPWDWQVDQLVYIEQGEVRVVPEGSKRYM--QFLAGDLVRYPKWLEADLF 122

Query: 579 *TKPYFESW 605
              PY E +
Sbjct: 123 FNAPYIERY 131


>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 440

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 357 VPSGIASNRHHIS-NFKSLLSFHNKQIGLCRALREHE 250
           +P  I  +RHH   +F S L F  K  G+CR + + +
Sbjct: 64  IPQTIRISRHHHRVSFISSLPFEEKSCGVCRQMLDSD 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,707
Number of Sequences: 28952
Number of extensions: 415119
Number of successful extensions: 994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)