Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30788
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   3.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   5.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.8  

>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -1

Query: 599 RYKLLQPLYFALK*CPFSQARDPLFTNSLQ**CISLIHLVFYFPAKFSIMYTKENSQSLV 420
           R  L Q   F L    F+  R     +SL+  C++++ +  Y P     +YT     S +
Sbjct: 16  RILLFQSRIFGL--VTFTPDRSKFRPSSLRF-CLNILSIFTYVPMILYCVYTTATYDSFM 72

Query: 419 SNKTNN 402
             KT N
Sbjct: 73  IYKTTN 78


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 588 VTTSILCIKIMPIFTGKGSSL----YKLFTVVMHLTHTFSILFPC 466
           +TT  L I I  I  G  +++    Y +  ++ H+  TFS +F C
Sbjct: 222 LTTLQLLIYIQVIVIGTKNTIETVAYSVIFILWHIVGTFSGIFLC 266


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 503 CISLIHLVFYFPAKFSIMYTKENSQSLVSNKTNN 402
           C++++ +  Y P     +YT     S +  KT N
Sbjct: 320 CLNILSIFTYVPMILYCVYTTATYDSFMIYKTTN 353


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 115 KAKIEXXXXXLNMNAKNMPK 56
           KAKI       N+N+K++P+
Sbjct: 182 KAKINTGKTQYNLNSKSLPR 201


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 648 CTHQVSFKLNGV 683
           CTHQV   LN +
Sbjct: 568 CTHQVDIPLNAI 579


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,814
Number of Sequences: 336
Number of extensions: 3433
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)