Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30788
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               29   3.0  
SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16)                29   3.9  
SB_43518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_27948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 523 VKRGSLACENGHYFNAKYRGCNNLYLYSVVVDVC 624
           VK      E  HY   K++ C N Y+Y+V +  C
Sbjct: 458 VKGCQAIMEKNHYDPRKFKCCGNRYVYNVKIQKC 491


>SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16)
          Length = 470

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 582 TSILCIKIMPIFTGKGSSLYKLFT 511
           T +LC K MP F+GK   L   FT
Sbjct: 260 TPLLCTKFMPEFSGKQQKLVSFFT 283


>SB_43518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 663 KLGACRFLVGAGITNIDDDTVQVQIVTTSILCIKIMPIFTGKG 535
           +LGA + +      NI  D VQ+    TS   +K MP+F+ KG
Sbjct: 2   RLGAIKQIASFVDKNISPDLVQLVADQTSFDAMKDMPMFSLKG 44


>SB_27948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 561 IMPIFTGKGSSLYKLFTVVMHLTHTFSILFPCK 463
           ++PI T  G S    F V + L  T+++ FP K
Sbjct: 99  VLPILTSFGFSASLAFLVSISLERTYAVFFPMK 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,537,459
Number of Sequences: 59808
Number of extensions: 392209
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)