Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30788
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043325-1|AAL10682.1| 1406|Homo sapiens CRB1 isoform II precurs...    30   7.5  
AY043324-1|AAL10681.1| 1376|Homo sapiens CRB1 isoform I precurso...    30   7.5  
AL513325-3|CAM17208.1| 1294|Homo sapiens crumbs homolog 1 (Droso...    30   7.5  
AL513325-2|CAH72584.1| 1406|Homo sapiens crumbs homolog 1 (Droso...    30   7.5  
AL139136-3|CAM21656.1| 1294|Homo sapiens crumbs homolog 1 (Droso...    30   7.5  
AL139136-2|CAI15311.1| 1406|Homo sapiens crumbs homolog 1 (Droso...    30   7.5  
AL136322-4|CAM23328.1| 1294|Homo sapiens crumbs homolog 1 (Droso...    30   7.5  
AL136322-3|CAI16646.1| 1406|Homo sapiens crumbs homolog 1 (Droso...    30   7.5  
AJ748821-1|CAG38658.1| 1294|Homo sapiens crumbs homologue 1 (alt...    30   7.5  
AF154671-1|AAF01361.1| 1376|Homo sapiens CRB1 protein.                 30   7.5  
AB208923-1|BAD92160.1|  441|Homo sapiens crumbs homolog 1 isofor...    30   7.5  

>AY043325-1|AAL10682.1| 1406|Homo sapiens CRB1 isoform II precursor
           protein.
          Length = 1406

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AY043324-1|AAL10681.1| 1376|Homo sapiens CRB1 isoform I precursor
           protein.
          Length = 1376

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AL513325-3|CAM17208.1| 1294|Homo sapiens crumbs homolog 1
           (Drosophila) protein.
          Length = 1294

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AL513325-2|CAH72584.1| 1406|Homo sapiens crumbs homolog 1
           (Drosophila) protein.
          Length = 1406

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AL139136-3|CAM21656.1| 1294|Homo sapiens crumbs homolog 1
           (Drosophila) protein.
          Length = 1294

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AL139136-2|CAI15311.1| 1406|Homo sapiens crumbs homolog 1
           (Drosophila) protein.
          Length = 1406

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AL136322-4|CAM23328.1| 1294|Homo sapiens crumbs homolog 1
           (Drosophila) protein.
          Length = 1294

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AL136322-3|CAI16646.1| 1406|Homo sapiens crumbs homolog 1
           (Drosophila) protein.
          Length = 1406

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AJ748821-1|CAG38658.1| 1294|Homo sapiens crumbs homologue 1
           (alternative protein) protein.
          Length = 1294

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AF154671-1|AAF01361.1| 1376|Homo sapiens CRB1 protein.
          Length = 1376

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 1   MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 56

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 57  SD--TANNLDKDCDNM 70


>AB208923-1|BAD92160.1|  441|Homo sapiens crumbs homolog 1 isoform
           II precursor variant protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 379 MVLKDYRSLFVLFDTSDCEFSFVYMIEN-FAGK*NTKCMS---EMHHYCKEFVKRGSLAC 546
           M LK+   L + +      FS +  I+N F  K NT+C+S   + +  CK+F K    +C
Sbjct: 26  MALKNINYLLIFY----LSFSLLIYIKNSFCNKNNTRCLSNSCQNNSTCKDFSKDNDCSC 81

Query: 547 ENGHYFNAKYRGCNNL 594
            +    N   + C+N+
Sbjct: 82  SD--TANNLDKDCDNM 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,634,911
Number of Sequences: 237096
Number of extensions: 1794075
Number of successful extensions: 6307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6307
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)