Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30788
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF022972-3|AAC48235.2|  526|Caenorhabditis elegans Udp-glucurono...    29   2.6  
AF003130-7|AAO38638.1|  247|Caenorhabditis elegans Dehydrogenase...    29   2.6  
Z74035-4|CAA98483.1|  373|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF047653-9|AAC04463.3|  299|Caenorhabditis elegans Serpentine re...    28   6.0  

>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 331 HLNFKNFLQSARVGTLMVLKDYRSLFVLFDTSDC 432
           ++ FKNF +S ++    +  D+ S+   +DT+DC
Sbjct: 226 YIEFKNFKKSQKI-PFTIYSDFESIIEKYDTADC 258


>AF022972-3|AAC48235.2|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein40 protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 540 KGSSLYKLFTVVMHLTHTFSILFPCKVFNHVH 445
           KG SLY  + +++  T +++IL  C +F H H
Sbjct: 2   KGFSLYLYYLLLISSTTSYNILVFCPLFGHSH 33


>AF003130-7|AAO38638.1|  247|Caenorhabditis elegans Dehydrogenases,
           short chain protein2, isoform b protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 690 LNSHHSI*KKLGACRFLVGAGITNIDDDTVQVQIVTTSILCIKI 559
           L  HH   + L AC FLV      I   T   ++VT + +C ++
Sbjct: 134 LFQHHMKSRALNACTFLVFCFFLTIQQQTYLGRVVTVASICARV 177


>Z74035-4|CAA98483.1|  373|Caenorhabditis elegans Hypothetical
           protein F47G9.6 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 466 AGK*NTKCMSEMHHYCKEFVKRGSLACENGHYFNAKYRGC 585
           +G  +T+ M  +H Y + F +  +L     +YF A+Y GC
Sbjct: 123 SGYLSTEWMVGLHKYNEYFSEEDNLFAYTNNYFPAQYYGC 162


>AF047653-9|AAC04463.3|  299|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 30 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 560 ILMQSIEVVTICTCTVSSSMFVIPAPTRNLH 652
           +++ SI +VT+C C+V S + +      N H
Sbjct: 188 VIISSITIVTVCICSVISMLCISRTHAENKH 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,242
Number of Sequences: 27780
Number of extensions: 317774
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)