Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30788
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65700.1 68418.m08269 leucine-rich repeat transmembrane prote...    29   2.4  
At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ...    29   4.2  
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ...    27   9.8  

>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 528 LYKLFTVVMHLTHTFSILFPCKVFNHVHKRKLTITGIKQNEQRPV 394
           L+ L   ++H++HTF+   P   F  +   K ++TG   ++  P+
Sbjct: 3   LFLLLLFLLHISHTFTASRPISEFRALLSLKTSLTGAGDDKNSPL 47


>At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1
           GB:AAF19609 from [Arabidopsis thaliana]
          Length = 354

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 448 TQKKTHNHWYQTKRTTTCNPSIPSMFQPLHF 356
           T+  T  +W  T  + + +PS+P  F   HF
Sbjct: 10  TRSNTKRYWCSTTTSISASPSLPKQFWSRHF 40


>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 764

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 484 KCMSEMHHYCKEFVKRGSLACEN 552
           K +  +H  C+EFV  G+L C N
Sbjct: 605 KALCYLHMECREFVSHGNLNCGN 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,312,947
Number of Sequences: 28952
Number of extensions: 274275
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)