Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30786
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.4  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   8.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 144 PSRHYRSGLR 115
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 236 LQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQL 337
           L+  R+  H+    + D+EPTV         RQL
Sbjct: 234 LEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 490 LPLLRWSTGSGFTS 531
           LPLL W  G GF S
Sbjct: 158 LPLLVWIYGGGFMS 171


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 178 MARCPQTRPSGVETILSTLSSARPE 252
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 490 LPLLRWSTGSGFTS 531
           LPLL W  G GF S
Sbjct: 158 LPLLVWIYGGGFMS 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,399
Number of Sequences: 438
Number of extensions: 5619
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)