Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30784
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.38 
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    27   3.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.5  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    27   4.7  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   4.7  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.2  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   8.2  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +2

Query: 2   KHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLN 181
           KH N   S  QK  EW R   N  +++ IN+   D +   Q   HD  +  +   M TL 
Sbjct: 711 KHLNTIDS--QKAQEWRREINNQFQVSNINSTDRDTK---QPKMHDFRQPLHPNPMTTLK 765

Query: 182 FEDAQNSVNLLNSAI 226
            +   NS +   S +
Sbjct: 766 RKGQHNSFSYDKSTL 780


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 331 IPFNTSSTSKLPFYNSKGEKIGEVNMMYN 417
           +PF+    S L   NS GE IG   M YN
Sbjct: 62  VPFSLMKPSDLVHINSDGEIIGGSKMKYN 90


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 766 HRKSRAHMWVKPAFLASNNPQYPWHSSTPMSY 671
           HR S+ H       L S+   YP HSS+P S+
Sbjct: 9   HRSSKDHGGKSRICLDSSEDTYPPHSSSPPSF 40


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 131 FHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIP 253
           F   AK +Y+T  I+L       S+++LN   S  + G IP
Sbjct: 259 FKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIP 299


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +1

Query: 334 PFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIELPYGVENRLSMLTW 513
           PF   +  KL F   KG        +Y    +      +    +  LP   + +   L  
Sbjct: 536 PFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFCCEEESLDRPAISTLPRNKDEK-DCLEV 594

Query: 514 CQTLVFHLA-SMFMKFKELSLDSFFEELR 597
             T+  HL  S+F+K  E +L +FF++L+
Sbjct: 595 FATIFIHLEPSIFLKVFETNLPTFFDQLK 623


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 53  RVNTNTIELAKINAIIVDKQRLPQQDFHDN---AKTYYETDMITLNFEDAQNSVNLLN 217
           R N+N  E+ ++NAI++D +   Q  F  N    + Y   D +    E+ + + +L+N
Sbjct: 254 RPNSNPFEVCELNAILLDAKIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLIN 311


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -3

Query: 342 VKWYSPLTFKIECTCQQHLR----VLETTGVNYL 253
           +K +S LTF++ECT   H R    V   TG  YL
Sbjct: 78  IKIWSALTFRLECTLFGHYRGISQVKWATGSKYL 111


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 489 FYTVWQFNDSCI*YFNVR 436
           ++T +QFND  + YFN+R
Sbjct: 289 WFTTYQFNDFNLAYFNIR 306


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 199 VLCIFEVKCYHISFVIGLCIVMKVLLW 119
           ++C+ E   Y IS V+ LC+ M    W
Sbjct: 130 LICLVETTVYQISVVLLLCLTMGWKSW 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,916,476
Number of Sequences: 5004
Number of extensions: 87682
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)