Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30784
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0771 + 6453130-6454488 43 4e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 42 9e-04
11_02_0011 - 7337618-7338496,7338596-7338991 40 0.002
11_01_0767 + 6438648-6438809,6439146-6440000 40 0.002
11_01_0750 - 6315126-6315896,6316371-6316784 40 0.002
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.003
11_02_0014 - 7352619-7352918,7353173-7353418 37 0.019
01_01_1152 + 9170628-9171899 36 0.057
11_02_0012 - 7346282-7347136,7347234-7347593 33 0.23
01_06_0824 - 32243495-32244319,32244449-32244859 33 0.23
02_02_0383 + 9579624-9579951,9580062-9580324,9580432-9580917,958... 31 1.6
05_06_0247 + 26661671-26661802,26661958-26662055,26662223-266622... 29 3.7
01_01_0433 + 3282195-3285185 28 8.6
>11_01_0771 + 6453130-6454488
Length = 452
Score = 42.7 bits (96), Expect = 4e-04
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 280 DSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKG 384
++ ++L +A+YFKG+W PFN S T + PFY G
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTERKPFYRHDG 235
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.5 bits (93), Expect = 9e-04
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Frame = +1
Query: 253 KIVDTGSFQDS-QMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTY 429
+I+ GS + +++L +ALYFKG WT F+ S T F+ G+ + M ++ Y
Sbjct: 231 EILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFMSTSKKQY 290
Query: 430 PFSNIKILNARVIELPY---GVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRI 600
S N +V++LPY G + + SM L S+ K L+ + F E I
Sbjct: 291 ILS---YDNLKVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEFLEKHI 344
Query: 601 SKEEFSDDEVDCFIPRFKIESNLGMTSVLKN 693
+ + + +P+FKI + +LK+
Sbjct: 345 PTRQVTVGQFK--LPKFKISFGFEASDLLKS 373
Score = 40.7 bits (91), Expect = 0.002
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +1
Query: 280 DSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNA 459
+++++L +ALYFKG W F+ S T F+ GE + + M R S+ L
Sbjct: 493 NTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESV-QAPFMSTRKKQYLSSYDSL-- 549
Query: 460 RVIELPY---GVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEEFSDDEV 630
+V++LPY G + + SM L S+ K L+ + F E I +
Sbjct: 550 KVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEFMENHIPMRPVHVGQF 606
Query: 631 DCFIPRFKIESNLGMTSVLK 690
+P+FKI G + +LK
Sbjct: 607 K--LPKFKISFGFGASGLLK 624
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 KIVDTGSFQ-DSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNR 420
+I+ GS D+ ++L +A+YFKG+W+ PF SST+ F+ G + +V M +R
Sbjct: 154 EILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSV-DVPFMSSR 209
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 40.3 bits (90), Expect = 0.002
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Frame = +1
Query: 280 DSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNA 459
D++ ++ +A+YFKG+W PF+ S T++ F G + EV M R + + ++ +
Sbjct: 86 DTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSV-EVPFM-QRPSGSYHHVACHDG 143
Query: 460 -RVIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEEFSDDEV-- 630
RV+ LPY + L +L +F+ L + + S EF D+ +
Sbjct: 144 FRVLRLPYKATSDTYNLKLRYSLPSFAMLVFLPDDRDGLPGLLDRITAS-PEFVDEHLPP 202
Query: 631 DCF------IPRFKIE-SNLGMTSVLK 690
C +P+FK+ + G+ VL+
Sbjct: 203 GCVPVGRFRVPKFKLAFCHYGIADVLR 229
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 40.3 bits (90), Expect = 0.002
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Frame = +1
Query: 250 TKIVDTGSF-QDSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHT 426
T ++ G+ Q++ ++L SALYF+G+W + T++ FY G + + Y+R T
Sbjct: 159 TTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFVEYDR-T 217
Query: 427 YPFSNIKILNARVIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISK 606
F+ N +VI+LPY + L +F +++ + F E +
Sbjct: 218 RLFAVHD--NFKVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPT 275
Query: 607 EEFSDDEVDCFIPRFKIESNLGMTSVLKNAMGIE 708
E+ V +P FKI + + LK+ MG+E
Sbjct: 276 EKC---HVGISVPNFKISFQIDVKDFLKD-MGLE 305
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 39.5 bits (88), Expect = 0.003
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Frame = +1
Query: 253 KIVDTGSFQDS-QMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTY 429
+I+ GS + +++L +ALYFKG WT F+ S T F G+ + M ++ Y
Sbjct: 23 EILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFMSTSKKQY 82
Query: 430 PFSNIKILNARVIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKE 609
S + +V++LPY L + L ++ +L+ + F E RI
Sbjct: 83 LSSYDSL---KVLKLPYQKGRDLRQFSMYILLPEAQDGLWSLAAKLNSEPEFLEKRIPTR 139
Query: 610 EFSDDEVDCFIPRFKIESNLGMTSVLK 690
+ + + +P+FKI + +LK
Sbjct: 140 QVTVGKFK--LPKFKISFGFEASDLLK 164
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 37.1 bits (82), Expect = 0.019
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 289 MLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVI 468
++L +A+YFKG+W+ PF ST+ F+ G + V M +R N V+
Sbjct: 117 LVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSV-NVRFMRSREDQYIGFYDGFN--VL 173
Query: 469 ELPY 480
+LPY
Sbjct: 174 KLPY 177
>01_01_1152 + 9170628-9171899
Length = 423
Score = 35.5 bits (78), Expect = 0.057
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 289 MLLTSALYFKGQWTIPFNTSSTSKLPFY 372
++L +A++FKG W++PF+ S+T PF+
Sbjct: 190 VVLANAVHFKGTWSLPFHPSATFHAPFH 217
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 33.5 bits (73), Expect = 0.23
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 253 KIVDTGSFQD-SQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTY 429
+I+ GS + ++L +A+YFKG+W+ PF T+ F+ G + M Y
Sbjct: 142 EILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQY 201
Query: 430 PFSNIKILNA-RVIELPY 480
I + +V++LPY
Sbjct: 202 ----IGFYDGFKVLKLPY 215
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 292 LLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIE 471
+L +ALYFKG W F+ STS FY G + M + Y +V+
Sbjct: 173 VLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFMSSGKWQYIACR---AGYKVLR 229
Query: 472 LPY 480
LPY
Sbjct: 230 LPY 232
>02_02_0383 +
9579624-9579951,9580062-9580324,9580432-9580917,
9581034-9581459
Length = 500
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +1
Query: 496 LSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEEFSD------DEVDCFIPRFKI 657
+S T ++V HLA F+ + +D RIS+E+ +E+ F PR++
Sbjct: 425 ISFKTNANSMVSHLAGKNSIFRAMPVDVIANAYRISREQARSLKNNRGEELGAFTPRYQQ 484
Query: 658 ESNLGMTSVLKN 693
++ LG ++ +N
Sbjct: 485 QTYLGFSNESEN 496
>05_06_0247 +
26661671-26661802,26661958-26662055,26662223-26662253,
26662607-26662667,26662693-26662754,26662793-26662892,
26663021-26663091,26663206-26663349,26663913-26663994,
26664380-26664456
Length = 285
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 382 GEKIGEVNMMYNRHTYPFSNIKILNARVIELP--YG-VENRLSMLTWCQ 519
GE +GEV ++ + H + A I LP YG +E L M+TWCQ
Sbjct: 131 GESVGEVIVVQDMHERKAEMARRSKA-FIALPGGYGTMEELLEMITWCQ 178
>01_01_0433 + 3282195-3285185
Length = 996
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 339 KWYSPL--TFKIECTCQ-QHLRVLETTGVNYLGILPW 238
K+Y PL T + C+ Q+LR+L+ N+ G+LP+
Sbjct: 742 KFYGPLGPTLAKDDECELQYLRILDLASNNFSGVLPY 778
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,776,973
Number of Sequences: 37544
Number of extensions: 553967
Number of successful extensions: 1362
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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