Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30784
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      65   6e-11
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      55   9e-08
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      51   1e-06
SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.18 
SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       29   3.8  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         28   8.7  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
 Frame = +1

Query: 256 IVDTGSF-QDSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYP 432
           ++  G F +D+ + L +A+YFKG W   FN ++T    F  +  ++I +V  MY    + 
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEI-QVQFMYQSSEFR 206

Query: 433 FSNIKILNARVIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEE 612
           +     L  +++ELPY  E +LSM+      V  L  +     + +L      LR S  E
Sbjct: 207 YLESSTLGCQIVELPYAGE-KLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPE 265

Query: 613 FSDDEVDCFIPRFKIESNLGMTSVLKNAMGIEDCLMRGK 729
               EV+  +P+F +     +   LK  MG  D    GK
Sbjct: 266 ----EVEVTLPKFTLTQEFSLGETLK-GMGASDLFSPGK 299


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 35/136 (25%), Positives = 64/136 (47%)
 Frame = +1

Query: 283 SQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNAR 462
           +++ L +A+YFKG W  PF    +    F  +   ++ EV MM+ +  + + +      +
Sbjct: 121 TRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV-EVEMMFQKSKFKYLHSDKYKCK 179

Query: 463 VIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEEFSDDEVDCFI 642
           ++ELPY V+ +LSM+         LA          +   F    +S +  +D EV  +I
Sbjct: 180 LLELPY-VDTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNS--VSSQRPADVEV--YI 234

Query: 643 PRFKIESNLGMTSVLK 690
           P+FK+ S   +   L+
Sbjct: 235 PKFKMTSEFKLNEALQ 250


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
 Frame = +1

Query: 283 SQMLLTSALYFKGQWTIPFNTSSTSKLPFY--NSKGEKIGEVNMMYNRHTYPFSNIKILN 456
           +++++ +A+YFKG W   F   +T    F+   S   KI EV MM  +    F     + 
Sbjct: 126 TRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKI-EVEMMTRKMKVNFYYDADIK 184

Query: 457 ARVIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEEFSDDEVDC 636
            RV+ELPY  ++   ++     L    + +F   K + ++   +  R+      +  V+ 
Sbjct: 185 CRVVELPYSGDDTAMVI----ILPEEPSGIFSLEKSIDVEIMEKWRRL----MINTTVEV 236

Query: 637 FIPRFKIESNLGMTSVLKNAMGIEDCLMRGKLVLPTYGLGTSYGLVVESGYXKA 798
            IP+F++   L + S+L++ +G+ D     K  L   G+  + GL V S   KA
Sbjct: 237 SIPKFRLSQKLELRSLLQD-LGVSDIFDSRKADLS--GISAAKGLYVSSAIHKA 287


>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
 Frame = +1

Query: 268  GSFQDSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNMMYNRHTY-PFSNI 444
            G  Q  ++    A YF G W+     + TSK     S    +    +M++  +  P  N+
Sbjct: 871  GEQQSIKLHANMAEYFLGTWSDGKKKTFTSKKGETMSMDRFVSSQPLMFDEKSEKPIYNL 930

Query: 445  KILNARVIELPYGVENRLSMLTWCQTLVFHLASMFMKFKELSLDSFFEELRISKEEFSDD 624
            + L+    ELPY +     +       + +   +  K +  SLD+  E+  ++ + FSDD
Sbjct: 931  RKLS----ELPYHLVLSAQLEKLKANALCNFKFLVTKLRARSLDAVLEDFSMALDSFSDD 986

Query: 625  -EVD 633
             E+D
Sbjct: 987  TELD 990


>SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
 Frame = +1

Query: 379 KGEKIGEVNMMYNRHTYPFSNIKILNARVIELPYGVENRLSMLTWCQTLVFHLASMFMK- 555
           K E++G +     +   P++   I +      PYG+   +SM    +  V H A + +K 
Sbjct: 23  KDERVGTIRRQCEQGLVPYAARSIDSTHPQPAPYGLRRTISMPDCNEMRVLHNAKIIIKP 82

Query: 556 ---FKELSLDSFFEELRISKEEFSDD--EVDCFIPRFKI----ESNLGMTSVLKNAM-GI 705
               K +   SF  E+ ++     +D  E    I ++K+    +S  G+T++   A+ G 
Sbjct: 83  ISDLKRIRSVSFEPEVLLASAVAENDLTEAQSLIDKYKLNIDHQSASGLTALHYAALEGS 142

Query: 706 EDCL 717
            +CL
Sbjct: 143 FECL 146


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = -2

Query: 637 NNRLHHLKIPP*RCAILQRMN------LMKAP*TS*TYLPSETP--GFGTMLTLTSGFL 485
           N+++    +PP RCA + R N         AP T  T  P  TP  G+G+ + LT+G +
Sbjct: 153 NSKIDSPTVPPTRCAFMSRFNDFRSLDCTNAPVTGGTNNPVVTPGSGWGSAMGLTTGHI 211


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 55  SQHEHNRTRQNQCHYCR*ATFATTRLS*QCK 147
           S+H HNR R+  C   R   F  TR    CK
Sbjct: 330 SEHNHNRKRKKNCQARRVYRFVPTRKKKHCK 360


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 122 QQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIPR 256
           Q+  HDN K     +    N+  A+N V+L+N  ISN    KIPR
Sbjct: 241 QESLHDNEKQLKYEEYC--NY--AKNLVDLVNDVISNLEKQKIPR 281


>SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 789 VPTFDHQTIGSPEPICG*NQLSSHQTILNTH 697
           +P+FDH+ + +P    G N  +++Q ILN H
Sbjct: 52  IPSFDHEELLTPREDGGSNLHTANQEILNIH 82


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 253  KIVDTGSFQDSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNS 378
            +++ TG   DSQ   TS+     QW IP   +STS + F +S
Sbjct: 1154 RVISTGPHSDSQSSGTSSSPQTQQWFIP-QKASTSSVDFLHS 1194


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 253 KIVDTGSFQDSQMLLTSALYFKGQWTIP 336
           KIV  G F +++M  T  +YF+  W  P
Sbjct: 800 KIVSFGEFMEAKMKFTMDIYFRQWWVDP 827


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,869,581
Number of Sequences: 59808
Number of extensions: 645873
Number of successful extensions: 1534
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)