Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30784
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   2.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 448 ILNARVIELP-YGVENRLSMLTWCQTLVFHL 537
           + N  + EL    VE ++S +T+C+   FHL
Sbjct: 189 VSNPMIAELETLSVEPKVSPMTFCRVFPFHL 219


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = -3

Query: 267 GVNYLGILPWVKLEMAEFNKLTEFCASSKLXXXXXXXXXVFALS*KSCCGKRCLSTIMAL 88
           G+  LG+L  + L++   +K  E   +            +F +S   CCG    S  M +
Sbjct: 25  GILTLGVL--IHLQILGVSKQIETGLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTI 82

Query: 87  ILASSIVFVL 58
             AS ++F+L
Sbjct: 83  TFASFLLFIL 92


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 448 ILNARVIELP-YGVENRLSMLTWCQTLVFHL 537
           + N  + EL    VE ++S +T+C+   FHL
Sbjct: 189 VSNPMIAELETLSVEPKVSPMTFCRVFPFHL 219


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 541 SMFMKFKELSLDSFFEELRISKEEFSDD 624
           +MF KF  L    +F+E  ++    +D+
Sbjct: 461 NMFKKFASLKKSPYFKEANLNTRMLNDN 488


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 541 SMFMKFKELSLDSFFEELRISKEEFSDD 624
           +MF KF  L    +F+E  ++    +D+
Sbjct: 461 NMFKKFASLKKSPYFKEANLNTRMLNDN 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,735
Number of Sequences: 438
Number of extensions: 6952
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)