Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30783
         (867 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   7.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   7.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   7.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 705 IQCTYRYRRTQTYILIVHILIEKKKVRFRCLGYFIYSF 592
           + C Y Y  +   I  +H+L     +   C+ YF Y+F
Sbjct: 209 LPCIY-YFYSAFIIFTIHLLFYCVLIILLCIYYFYYAF 245


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -1

Query: 777 WFNVPGNP*RNTFMVLIYQNITMEIQCTYRYRRTQTYILIVHILIEKKKVRFRCLGYFIY 598
           W  V  NP   T  ++    I + +     +    +Y+  +  L + KK  F+   YFIY
Sbjct: 1   WPLVENNP---TLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKK-EFKTRTYFIY 56

Query: 597 SF 592
           +F
Sbjct: 57  AF 58


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -1

Query: 777 WFNVPGNP*RNTFMVLIYQNITMEIQCTYRYRRTQTYILIVHILIEKKKVRFRCLGYFIY 598
           W  V  NP   T  ++    I + +     +    +Y+  +  L + KK  F+   YFIY
Sbjct: 234 WPLVENNP---TLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKK-EFKTRTYFIY 289

Query: 597 SF 592
           +F
Sbjct: 290 AF 291


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -1

Query: 777 WFNVPGNP*RNTFMVLIYQNITMEIQCTYRYRRTQTYILIVHILIEKKKVRFRCLGYFIY 598
           W  V  NP   T  ++    I + +     +    +Y+  +  L + KK  F+   YFIY
Sbjct: 234 WPLVENNP---TLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKK-EFKTRTYFIY 289

Query: 597 SF 592
           +F
Sbjct: 290 AF 291


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 736 GFNLPKHYDGNPVYIS 689
           G+    HY+G+P YIS
Sbjct: 436 GYYENNHYNGDPNYIS 451


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 736 GFNLPKHYDGNPVYIS 689
           G+    HY+G+P YIS
Sbjct: 384 GYYENNHYNGDPNYIS 399


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,065
Number of Sequences: 336
Number of extensions: 4379
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)