Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30783
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    29   1.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   4.6  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    26   8.0  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    26   8.0  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -3

Query: 703 PVYISLP---KNTDLHFNCSHSNRKEKGEVSLSWLFYL*----FSKYSCYLW 569
           P+ +  P   K     F  SHS   E   ++L+ L+ L     +SKYS YLW
Sbjct: 467 PILLHFPFLLKKNSAQFAYSHSRALESATLALNQLYELGSNPEYSKYSWYLW 518


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 766 PWESLTEYIYGFNLPKHYDGNPVYISLPKNTDLHFNCSHS 647
           P+++L E+ Y  NL KH+  +P    +P    +  +C H+
Sbjct: 107 PYQNLPEF-YNDNLIKHFHKDPEAAKVPHLYSIASSCYHA 145


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 142 FEYRWRHLGEVSRNGVTEFDWDSNLEDATTEKYRG-K*GAART 267
           FEY+ +    +SR  V+++ W++   D  T++ +  K GA  T
Sbjct: 325 FEYQGQKCSALSRLYVSKYAWENGFRDELTKQVKSLKVGAPLT 367


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 787 FKLVPYSLNSILHPQMP 837
           F  +P SLNS+LH  +P
Sbjct: 46  FNFLPLSLNSVLHTNLP 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,264
Number of Sequences: 5004
Number of extensions: 72554
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)