BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30783 (867 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 29 1.1 SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 4.6 SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 26 8.0 SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 26 8.0 >SPAC139.03 |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 625 Score = 28.7 bits (61), Expect = 1.1 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Frame = -3 Query: 703 PVYISLP---KNTDLHFNCSHSNRKEKGEVSLSWLFYL*----FSKYSCYLW 569 P+ + P K F SHS E ++L+ L+ L +SKYS YLW Sbjct: 467 PILLHFPFLLKKNSAQFAYSHSRALESATLALNQLYELGSNPEYSKYSWYLW 518 >SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr 2|||Manual Length = 1471 Score = 26.6 bits (56), Expect = 4.6 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -3 Query: 766 PWESLTEYIYGFNLPKHYDGNPVYISLPKNTDLHFNCSHS 647 P+++L E+ Y NL KH+ +P +P + +C H+ Sbjct: 107 PYQNLPEF-YNDNLIKHFHKDPEAAKVPHLYSIASSCYHA 145 >SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual Length = 548 Score = 25.8 bits (54), Expect = 8.0 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 142 FEYRWRHLGEVSRNGVTEFDWDSNLEDATTEKYRG-K*GAART 267 FEY+ + +SR V+++ W++ D T++ + K GA T Sbjct: 325 FEYQGQKCSALSRLYVSKYAWENGFRDELTKQVKSLKVGAPLT 367 >SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 25.8 bits (54), Expect = 8.0 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +1 Query: 787 FKLVPYSLNSILHPQMP 837 F +P SLNS+LH +P Sbjct: 46 FNFLPLSLNSVLHTNLP 62 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,482,264 Number of Sequences: 5004 Number of extensions: 72554 Number of successful extensions: 152 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 152 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 432473040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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