Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30783
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 495 TLY*PCTAS*YLIKSNTN*AVWSCDTFVSPISRKYWLF 382
           TL   C  + Y I+S     VW  DT V PI+RK  +F
Sbjct: 507 TLRVTCPVAGYPIES----IVWERDTRVLPINRKQKVF 540


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -3

Query: 724 PKHYDGNPVYISLPKNTDLHFNCSHSNRKEKGEVSLSW 611
           P H +  P  +S+    +  F C  S   + G   ++W
Sbjct: 330 PLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITW 367


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -3

Query: 724 PKHYDGNPVYISLPKNTDLHFNCSHSNRKEKGEVSLSW 611
           P H +  P  +S+    +  F C  S   + G   ++W
Sbjct: 330 PLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITW 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,131
Number of Sequences: 438
Number of extensions: 5141
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)