Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30780
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.86 
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    24   1.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   6.1  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 510 GEYTLLEAD-GSVRKVEYTAD 569
           GEY ++  D GS+R V YTAD
Sbjct: 218 GEYGVVSHDDGSLRGVRYTAD 238


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 13  RSPECCAGSECCRSLA*AALFFGCCC 90
           R P C AGS  CR       F G CC
Sbjct: 87  REP-CIAGSAPCRKNTGRCAFDGICC 111


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 88  CLLSKHRPSRPTTAPW 135
           C L KH+P+R    P+
Sbjct: 107 CALRKHKPNRKPRTPF 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,522
Number of Sequences: 336
Number of extensions: 1747
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)