Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30780
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         32   0.57 
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    29   4.0  
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268...    29   4.0  
01_06_1372 + 36726129-36728240                                         29   4.0  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    29   5.3  
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922...    28   9.2  
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     28   9.2  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +1

Query: 286 ATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEE---YAHPKYDFAYSVADG 456
           A+  +AAA P   A  +  A     V +    +L+SA HE     YA+ + D A   ADG
Sbjct: 198 ASGSVAAALP---AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADG 254

Query: 457 HSGDNKSQHESRDG 498
           H   ++SQ E   G
Sbjct: 255 HHNQDESQREHHHG 268


>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 298 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADG 456
           +AAA P  YA  +  AAP A +  P      S     EY H  Y F   +  G
Sbjct: 43  LAAAHPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYG 95


>03_06_0528 -
           34526038-34526164,34526250-34526500,34526584-34526804,
           34526963-34527017
          Length = 217

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/42 (21%), Positives = 25/42 (59%)
 Frame = -2

Query: 622 HDEAGAELLTTALKPWWSSAVYSTLRTEPSASRRVYSPAQRH 497
           HD+   ++ +T+ + WW+ + ++ L   PS  ++++  +Q +
Sbjct: 161 HDDDDDDVASTSSECWWTRSSWAFLNETPSPEQQMFGKSQTY 202


>01_06_1372 + 36726129-36728240
          Length = 703

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 172 VDGYWSGGYIFGAMELWLVVTDDALRGD 89
           +DG +  GYI  A  LW  +T+D L  D
Sbjct: 622 MDGLYETGYIDKAATLWTSITEDGLEPD 649


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 116 RDGRCFERRQQQPKNSAAQARDLQHSLP 33
           RDG  +  RQQQ + +AA A  +Q  LP
Sbjct: 318 RDGVLYFNRQQQQQQAAAAAASVQQQLP 345


>03_05_0398 +
           23790257-23790323,23791116-23791339,23792208-23792275,
           23794738-23794980,23795108-23795237,23797235-23797954
          Length = 483

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 631 HEPHDEAGAELLTTALKPWWSSAVYSTLRTEPSASRRVYSPAQRHRRGTRAG 476
           H+   +A + LL TAL       +  TL  EP   + +      HRR  R G
Sbjct: 246 HQSSTDAASSLLVTALNEGRDVILDGTLSWEPFVQQTIAMARDVHRRRYRMG 297


>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 265 LRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPK 426
           +RH + H+++ +  A P+  A P+  ++P++    P   +  S HHE +  H K
Sbjct: 214 IRHSRDHSSDCLTPA-PMPPA-PLSCSSPISIKQPPRLSIQRSQHHERDTRHAK 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,751
Number of Sequences: 37544
Number of extensions: 236556
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)