Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30780
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_17590| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  
SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        28   9.4  

>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 280 PHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYD 432
           PHA  + A     HYA P + AAP +++     K     +       P YD
Sbjct: 622 PHAQVFFAGRGVHHYAIPQYTAAPSSEIAKIVKKEPTECNETSSVWRPWYD 672


>SB_17590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -2

Query: 589 ALKPWWSSAVYSTLR--TEPSASRRVYSPAQRHR 494
           A  PWW+S  YS L    EP      YS   +HR
Sbjct: 353 ATDPWWTSKAYSILNRVMEPGQPAMHYSAYSKHR 386


>SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 643 VCGRHEPHDEAGAELLTTALKPWWSSAVYST 551
           V  RHE H E  A+    A + +W+SA+  T
Sbjct: 333 VADRHEVHPELSADAFEQAPQSFWTSALLRT 363


>SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 112 TDDALRGDSSSRRIVRLRQ--ETCSTHCQHST 23
           TD+A  G   +RRI R  Q  +T STHC H T
Sbjct: 23  TDNA-HGTDFTRRIARTLQIHQTDSTHCTHQT 53


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 376 HKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVLASTLSL-KLMVQCAK 552
           H+   + HH ++  HP+ D     AD H  D  ++H  +D D +  ++ ++ K  V  AK
Sbjct: 671 HRRQDADHHRQDVVHPRQD-----ADHHRQD--AEHHRQDADHIAKTSFTIGKTSVTIAK 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,514
Number of Sequences: 59808
Number of extensions: 246032
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)