Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30780
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 30 2.0
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 30 2.0
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 30 2.0
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p... 29 2.7
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 6.2
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 28 8.2
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 28 8.2
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +1
Query: 304 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 483
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 484 ESRDGDA 504
S +G++
Sbjct: 1564 GSENGES 1570
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +1
Query: 304 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 483
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 484 ESRDGDA 504
S +G++
Sbjct: 1602 GSENGES 1608
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +1
Query: 304 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 483
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 484 ESRDGDA 504
S +G++
Sbjct: 1564 GSENGES 1570
>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
protein ZK328.7b protein.
Length = 1098
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +1
Query: 241 WRRLLQTILRHDQPHATN-YIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYA 417
WR ++ I+ DQP +N YI VH + YA V+ + +L S E
Sbjct: 249 WRGVMDCIMNADQPEGSNPYIEVLRTVH---GICYAGEVSMLKRTLQLLLKSLDENEATN 305
Query: 418 HPKYDFAYSVADGHSG-DNKSQHESRD 495
H Y + SG D K +RD
Sbjct: 306 HVLYARITKLLVSISGRDEKILRHARD 332
>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
protein ZK328.7a protein.
Length = 1332
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +1
Query: 241 WRRLLQTILRHDQPHATN-YIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYA 417
WR ++ I+ DQP +N YI VH + YA V+ + +L S E
Sbjct: 249 WRGVMDCIMNADQPEGSNPYIEVLRTVH---GICYAGEVSMLKRTLQLLLKSLDENEATN 305
Query: 418 HPKYDFAYSVADGHSG-DNKSQHESRD 495
H Y + SG D K +RD
Sbjct: 306 HVLYARITKLLVSISGRDEKILRHARD 332
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 298 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 396
+ AAAP A+P AP A ++AP VL +A
Sbjct: 55 VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 439 YSVADGHSGDNKSQHESRDGDAVLASTLS 525
YS+A G+ GD K H+SR G + + + L+
Sbjct: 452 YSLATGNWGDQKKAHQSRAGVSQVLNRLT 480
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 439 YSVADGHSGDNKSQHESRDGDAVLASTLS 525
YS+A G+ GD K H+SR G + + + L+
Sbjct: 253 YSLATGNWGDQKKAHQSRAGVSQVLNRLT 281
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 379 KVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVLASTLSLKL 534
+V++SA ++ ++ ADG D S+ ESRD L S +S+++
Sbjct: 665 RVMISAARPS-FSSDSRKMSFLSADGRLEDRGSRRESRDSRGSLESDMSIRI 715
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,143
Number of Sequences: 27780
Number of extensions: 175523
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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