Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30779
(862 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 161 5e-40
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 3e-37
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 4e-33
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 98 9e-21
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 87 1e-17
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 5e-17
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 83 4e-16
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 5e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 5e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 9e-04
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 37 0.018
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 33 0.23
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.91
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 2.1
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 2.1
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 2.1
SB_53435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 28 8.5
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 8.5
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 161 bits (392), Expect = 5e-40
Identities = 71/103 (68%), Positives = 84/103 (81%)
Frame = +1
Query: 220 QGLHFPSCHPQFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 399
+G F PQFM QGGDFT HNGTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TN
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 400 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETLAASLGR 528
GSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E + + G+
Sbjct: 242 GSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGK 284
Score = 96.3 bits (229), Expect = 3e-20
Identities = 41/62 (66%), Positives = 48/62 (77%)
Frame = +2
Query: 86 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNSCCK 265
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP C+
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 266 EG 271
G
Sbjct: 197 GG 198
Score = 35.5 bits (78), Expect = 0.056
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +3
Query: 507 LGSQSGKTSKRIVIKDCGQIA 569
+GSQSGK SK++VI DCG+++
Sbjct: 278 VGSQSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 152 bits (369), Expect = 3e-37
Identities = 69/103 (66%), Positives = 81/103 (78%)
Frame = +1
Query: 220 QGLHFPSCHPQFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 399
+G F P FM QGGDFT +GTGGKSIYG KF DENF LKHTGPG+LSMANAG TN
Sbjct: 48 KGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTN 107
Query: 400 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETLAASLGR 528
GSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE + + G+
Sbjct: 108 GSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGK 150
Score = 96.3 bits (229), Expect = 3e-20
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = +2
Query: 95 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNSCCKEG 271
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP C+ G
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGG 64
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 507 LGSQSGKTSKRIVIKDCGQI 566
+GS SGKTSK++VI D +
Sbjct: 144 VGSDSGKTSKKVVIADSASV 163
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 140 bits (340), Expect = 1e-33
Identities = 65/97 (67%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
Frame = +1
Query: 253 FMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 432
FM+QGGDFTN +GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KT
Sbjct: 82 FMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKT 141
Query: 433 SWLDGRHVVFGNVVEGMEVVKQIE-TLAASLGRPLRE 540
SWLDG H FG V+EGM+VV++IE T + +PL E
Sbjct: 142 SWLDGSHTCFGKVLEGMDVVRRIENTRVDTHDKPLDE 178
Score = 64.5 bits (150), Expect = 1e-10
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +2
Query: 89 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNSCCKE 268
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI N +
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 269 G 271
G
Sbjct: 87 G 87
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 138 bits (335), Expect = 4e-33
Identities = 63/79 (79%), Positives = 68/79 (86%)
Frame = +1
Query: 253 FMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 432
FM+QGGDFT +GTGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT
Sbjct: 101 FMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKT 160
Query: 433 SWLDGRHVVFGNVVEGMEV 489
WLDGRHVVFG V++GMEV
Sbjct: 161 PWLDGRHVVFGKVLKGMEV 179
Score = 34.7 bits (76), Expect = 0.098
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Frame = +2
Query: 89 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 214
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 215 GYKGSIFHRVIPNSCCKEG 271
GYK SIFHRVI + + G
Sbjct: 88 GYKNSIFHRVIQDFMIQGG 106
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.9 bits (233), Expect = 9e-21
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 462
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 463 GNVVEGMEVVKQI 501
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +1
Query: 235 PSCHPQFMLQGGDFTNH----NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNG 402
P+C+ ++Q H G GG+S+YG FEDE+F++ H GV+ MAN G TNG
Sbjct: 24 PACNISSLVQRWKVCKHIEGGRGIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNG 83
Query: 403 SQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 504
SQF+IT W+D ++V FG V+EG+ V+ +E
Sbjct: 84 SQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVLE 117
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 85.4 bits (202), Expect = 5e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +1
Query: 373 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETLAASLGRPLR 537
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E + P++
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVK 55
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 82.6 bits (195), Expect = 4e-16
Identities = 43/75 (57%), Positives = 52/75 (69%)
Frame = +1
Query: 286 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 465
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 466 NVVEGMEVVKQIETL 510
+V++G E+V+QIE+L
Sbjct: 75 HVIQGEELVRQIESL 89
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +1
Query: 346 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 504
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +1
Query: 364 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 501
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 5e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +2
Query: 128 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 241
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 9e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 349 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 465
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 37.9 bits (84), Expect = 0.010
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 223 GLHFPSCHPQFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGA-DTN 399
G F P FM+QGG F + + ++E H G L+MA D+
Sbjct: 62 GTQFHRVIPGFMVQGGGF---DADMQQKDTQAPIKNEADNGLHNVRGTLAMARTQVRDSA 118
Query: 400 GSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 501
SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 119 TSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
Score = 34.7 bits (76), Expect = 0.098
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 125 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNSCCKEG 271
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP + G
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGG 77
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 37.1 bits (82), Expect = 0.018
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 125 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVI 247
+G I IEL TPK C NF LC +G+ Y +IFHR++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +1
Query: 451 HVVFGNVVEGMEVVKQIETL 510
HVVFG+V++G E+V+QIE+L
Sbjct: 3 HVVFGHVIQGEELVRQIESL 22
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.91
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 491 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 354
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 464 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 354
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.91
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 494 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 354
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 160 DVTSQL-NNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNASLVNAR 5
DV S L S WGI + D+E+ W + I+ L++ H D+A ++ +
Sbjct: 90 DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSARKMDGK 142
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 119 APLGKIVIELRSDVTPKTCENFRALCTG 202
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 467 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 354
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_53435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 165 PRRVKTSVPCALARKASVTRAPFSIVSSPIHAARRGLHQP*RHW 296
P+R + +P ALA+ S+ R P +++ +H RG HW
Sbjct: 18 PKRFPSGIP-ALAQYVSINRIPIGSLAAYLHQTPRGSLAAYLHW 60
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 467 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 354
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 198 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 67
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 300 SPSAVMVGEVPSLQ----HELGMTRWKMEPL*PKPFSPVHRARKFSHV 169
SPS V E PS + H + + K EP P+P SP + + SHV
Sbjct: 522 SPSGNSVNEQPSPRSNSPHNVSRSPHKQEPSSPRPSSPRSMSPRRSHV 569
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 560 TTVFDNDSLRGLPRLAAKVSICLTTSMP-STTFPKTTCLPSSQEV 429
T+ D ++RG + ++ TT +P +TT P+TT +P + V
Sbjct: 2205 TSASDTTAVRGTTAVPESTAVPGTTVVPETTTLPETTAVPETTAV 2249
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 300 SPSAVMVGEVPSLQ----HELGMTRWKMEPL*PKPFSPVHRARKFSHV 169
SPS V E PS + H + + K EP P+P SP + + SHV
Sbjct: 3050 SPSGNSVNEQPSPRSNSPHNVSRSPHKQEPSSPRPSSPRSMSPRRSHV 3097
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,306,935
Number of Sequences: 59808
Number of extensions: 641437
Number of successful extensions: 1872
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1865
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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