Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30779
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   3.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   4.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   8.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 209 GFGYKGSIFHRVIPNSCCKEGTS 277
           GFGY+ ++ ++V+P++     TS
Sbjct: 389 GFGYESNVKYQVVPSALQMWSTS 411


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 209 GFGYKGSIFHRVIPNSCCKEGTS 277
           GFGY+ ++ ++V+P++     TS
Sbjct: 389 GFGYESNVKYQVVPSALQMWSTS 411


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 209 GFGYKGSIFHRVIPNSCCKEGTS 277
           GFGY+ ++ ++V+P++     TS
Sbjct: 15  GFGYESNVKYQVVPSALQMWSTS 37


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 67  ISNVSNLQNHHNDNASL 17
           ISN+SN  N++N N  L
Sbjct: 90  ISNISNYNNNNNYNKKL 106


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 67  ISNVSNLQNHHNDNASL 17
           ISN+SN  N++N N  L
Sbjct: 328 ISNISNYNNNNNYNKKL 344


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 67  ISNVSNLQNHHNDNASL 17
           ISN+SN  N +N N  L
Sbjct: 90  ISNISNYNNDNNYNKKL 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,492
Number of Sequences: 438
Number of extensions: 6044
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)