Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30778
         (823 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   3.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   6.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 243 GQWNWSSCT*MCESQGLCYICWIQF 317
           G W W SC+   +    CY C I+F
Sbjct: 408 GMWMWLSCSSFFQQFFHCY-CPIKF 431


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 464 KTLAPKCHMPNDKSSAIYSNASGHGSVPSL 375
           + L+P+   P D S  +  + SG GS  SL
Sbjct: 198 RDLSPRNGSPTDHSPVLNLSKSGGGSAGSL 227


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 325 SYLATVDMSGVIKVWKY 375
           +Y+ATV ++ VI  WK+
Sbjct: 449 AYVATVWINSVINRWKF 465


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 769 GENSW*TCKPENGSRNC 819
           GE    TCK ENG   C
Sbjct: 869 GEYKCVTCKCENGKPTC 885


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -1

Query: 202 FTIGVEITTKYRTHVFAEH*CRMIFRGF 119
           + + + I   Y  ++F +  C+++ +GF
Sbjct: 379 YVLLINIFASYFAYIFGKFACKIMIQGF 406


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -1

Query: 202 FTIGVEITTKYRTHVFAEH*CRMIFRGF 119
           + + + I   Y  ++F +  C+++ +GF
Sbjct: 379 YVLLINIFASYFAYIFGKFACKIMIQGF 406


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -1

Query: 202 FTIGVEITTKYRTHVFAEH*CRMIFRGF 119
           + + + I   Y  ++F +  C+++ +GF
Sbjct: 379 YVLLINIFASYFAYIFGKFACKIMIQGF 406


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -1

Query: 202 FTIGVEITTKYRTHVFAEH*CRMIFRGF 119
           + + + I   Y  ++F +  C+++ +GF
Sbjct: 379 YVLLINIFASYFAYIFGKFACKIMIQGF 406


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 752 NMTFPSVEIEAHKTIVWVNVNC 687
           N TFPS+++  ++    V V+C
Sbjct: 99  NKTFPSIQVMGYQGRAVVVVSC 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,807
Number of Sequences: 336
Number of extensions: 4948
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)