Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30778
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   2.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   2.0  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   2.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 633 TSAVTHQLPANVHQIRVTAIDIHPDNSLMGFNLYRWKSHIDYNQPW 770
           T A+T ++   + Q+    ID++  N +M  NL+  +S  DY   W
Sbjct: 47  TDALTVKIKLKLSQL----IDVNLKNQIMTTNLWVEQSWYDYKLKW 88


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 NTSGETKVLQGHNVKVECAKLFTDG 578
           NT+  TK++ GH V +     +TDG
Sbjct: 78  NTTSTTKIIDGHVVTIN-ETTYTDG 101


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 NTSGETKVLQGHNVKVECAKLFTDG 578
           NT+  TK++ GH V +     +TDG
Sbjct: 126 NTTSTTKIIDGHVVTIN-ETTYTDG 149


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 NTSGETKVLQGHNVKVECAKLFTDG 578
           NT+  TK++ GH V +     +TDG
Sbjct: 126 NTTSTTKIIDGHVVTIN-ETTYTDG 149


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 NTSGETKVLQGHNVKVECAKLFTDG 578
           NT+  TK++ GH V +     +TDG
Sbjct: 126 NTTSTTKIIDGHVVAIN-ETTYTDG 149


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPW 770
           ID++  N +M  NL+  +S  DY   W
Sbjct: 66  IDVNLKNQIMTTNLWVEQSWYDYKLRW 92


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPW 770
           ID++  N +M  NL+  +S  DY   W
Sbjct: 66  IDVNLKNQIMTTNLWVEQSWYDYKLRW 92


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 24  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 52


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 24  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 52


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 24  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 52


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 24  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 52


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 24  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 52


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 24  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 52


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 243 GQWNWSSCT*MCESQGLCYICWIQF 317
           G W W SC+   +    CY C ++F
Sbjct: 412 GMWMWLSCSSFFQQFFHCY-CPVRF 435


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 92  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 120


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 690 IDIHPDNSLMGFNLYRWKSHIDYNQPWGK 776
           ID+   N ++  N +     +DYN  W +
Sbjct: 92  IDVDEKNQILTTNAWLKLEWVDYNLQWNE 120


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 752 NMTFPSVEIEAHKTIVWVNVNC 687
           N TFP+++I  +K    V V+C
Sbjct: 81  NKTFPTIKIVGYKGRALVVVSC 102


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 752 NMTFPSVEIEAHKTIVWVNVNC 687
           N TFP+++I  +K    V V+C
Sbjct: 81  NKTFPTIKIVGYKGRALVVVSC 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,946
Number of Sequences: 438
Number of extensions: 5516
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)