BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30777 (806 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 29 3.3 03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379 29 3.3 02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 5.8 02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 28 7.6 >10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-988548, 989153-989202,989237-989270,990177-990239,990339-990403, 990485-990560,991274-991353,991514-991628,991729-991830 Length = 491 Score = 29.5 bits (63), Expect = 3.3 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +1 Query: 49 RDRRHSAGRAGAVDAVEDGHHHTRPTRVRTLRKGTYDGQMGYGRE 183 R R S R D+ ED HHH R R +G D + +GR+ Sbjct: 316 RTRERSHDRTRERDSKEDRHHHRDRDRTRDRERGR-DRERDHGRD 359 >03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379 Length = 373 Score = 29.5 bits (63), Expect = 3.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 118 VYGGGHLPQHQQRQPDQHYGG 56 ++G GH H Q QP QH+GG Sbjct: 1 MFGFGHHGHHGQDQPPQHHGG 21 >02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 Length = 874 Score = 28.7 bits (61), Expect = 5.8 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -3 Query: 699 LLSHGT*QYKIRCRTGSVTSCDTGRLLHTYII 604 L+ HGT Q IRCRTG S +T LHT + Sbjct: 323 LVGHGTYQTNIRCRTGH-PSLETLWGLHTLAV 353 >02_05_0096 + 25785995-25786311,25786716-25786776,25787825-25788059, 25788292-25788530,25789700-25789951,25790043-25790223, 25790864-25790952,25791269-25791342,25791481-25791584, 25791919-25791957,25792324-25792436 Length = 567 Score = 28.3 bits (60), Expect = 7.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 103 HLPQHQQRQPDQHYGGDHAQDYTQ 32 H Q+ QRQP QH+ +H Q + Q Sbjct: 44 HHQQYVQRQPQQHHHHNHHQQHQQ 67 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,906,886 Number of Sequences: 37544 Number of extensions: 394173 Number of successful extensions: 1004 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 983 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1004 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2197677108 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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