Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30777
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    29   3.3  
03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379     29   3.3  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     29   5.8  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    28   7.6  

>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 49  RDRRHSAGRAGAVDAVEDGHHHTRPTRVRTLRKGTYDGQMGYGRE 183
           R R  S  R    D+ ED HHH    R R   +G  D +  +GR+
Sbjct: 316 RTRERSHDRTRERDSKEDRHHHRDRDRTRDRERGR-DRERDHGRD 359


>03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379
          Length = 373

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 118 VYGGGHLPQHQQRQPDQHYGG 56
           ++G GH   H Q QP QH+GG
Sbjct: 1   MFGFGHHGHHGQDQPPQHHGG 21


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 699 LLSHGT*QYKIRCRTGSVTSCDTGRLLHTYII 604
           L+ HGT Q  IRCRTG   S +T   LHT  +
Sbjct: 323 LVGHGTYQTNIRCRTGH-PSLETLWGLHTLAV 353


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 103 HLPQHQQRQPDQHYGGDHAQDYTQ 32
           H  Q+ QRQP QH+  +H Q + Q
Sbjct: 44  HHQQYVQRQPQQHHHHNHHQQHQQ 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,886
Number of Sequences: 37544
Number of extensions: 394173
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)