Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30777
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0) 64 1e-10
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 55 6e-08
SB_12555| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_48535| Best HMM Match : DUF412 (HMM E-Value=3.5) 33 0.27
SB_46524| Best HMM Match : Galactosyl_T (HMM E-Value=1.2) 28 7.7
SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2) 28 7.7
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01) 28 7.7
>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 467
Score = 64.5 bits (150), Expect = 1e-10
Identities = 26/79 (32%), Positives = 46/79 (58%)
Frame = +2
Query: 2 ERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMATTIHDRREFARFEKERMMAKWDTGE 181
+++CP+ P ++ K+ ++ DR E+ +FE++RM +KW +
Sbjct: 389 KQDCPEPAPILAIVLGVVGGILLIGLLLLLIGKIMVSMVDRIEYKKFERDRMRSKWHREK 448
Query: 182 NPIYKQATSTFKNPTYAGK 238
NP+YK+A +TF+NPTYAG+
Sbjct: 449 NPLYKEAKTTFENPTYAGR 467
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +2
Query: 2 ERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMATTIHDRREFARFEKERMMAKWDT 175
ER+CP++ ++WK+ TI DRREFA+FEKER AKWDT
Sbjct: 641 ERDCPEEAEALAVILGVVGGVLGVGLALLLIWKLLATIQDRREFAKFEKERQNAKWDT 698
>SB_12555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 119 DRREFARFEKERMMAKWDT 175
DRREFA+FEKER AKWDT
Sbjct: 91 DRREFAKFEKERSQAKWDT 109
>SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 119 DRREFARFEKERMMAKWDT 175
DRREFA+FEKER AKWDT
Sbjct: 168 DRREFAKFEKERSQAKWDT 186
>SB_48535| Best HMM Match : DUF412 (HMM E-Value=3.5)
Length = 282
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 426 RNVVFIFNLCLTVYSFPVGKTIAFMTNVC 512
+ + FI N CL FP+ KT+AF+ N C
Sbjct: 76 KTLAFIKNTCLYQKHFPLSKTLAFIKNTC 104
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 432 VVFIFNLCLTVYSFPVGKTIAFMTNVC 512
V FI N CL P+ KT+AF+ N C
Sbjct: 40 VAFIKNTCLYQKHLPLSKTLAFIKNTC 66
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 426 RNVVFIFNLCLTVYSFPVGKTIAFMTNVC 512
+ + FI N CL P+ KT+AF+ N C
Sbjct: 57 KTLAFIKNTCLYQKHLPLSKTLAFIKNTC 85
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 426 RNVVFIFNLCLTVYSFPVGKTIAFMTNVC 512
+ + FI N CL P+ KT+AF+ N C
Sbjct: 95 KTLAFIKNTCLYQKHLPLSKTLAFIKNTC 123
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 426 RNVVFIFNLCLTVYSFPVGKTIAFMTNVC 512
+ + FI N CL P+ KT+AF+ N C
Sbjct: 114 KTLAFIKNTCLYQKHLPLSKTLAFIKNTC 142
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 426 RNVVFIFNLCLTVYSFPVGKTIAFMTNVC 512
+ + FI N CL P+ KT+AF+ N C
Sbjct: 133 KTLAFIKNTCLYQKHLPLSKTLAFIKNTC 161
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 426 RNVVFIFNLCLTVYSFPVGKTIAFMTNVC 512
+ + FI N L FP+ KT+AF+ N C
Sbjct: 171 KTLAFIKNTFLYQKHFPLSKTLAFIENTC 199
>SB_46524| Best HMM Match : Galactosyl_T (HMM E-Value=1.2)
Length = 177
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 135 HASKRNV*WPNGIRARIQFTSKRRRRSRIQLTPENKS 245
HA ++ W N I RI F R +R L PE K+
Sbjct: 128 HADQQIAIWLNNIPGRIYFNDPRLHHARAGLIPEFKT 164
>SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)
Length = 251
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 135 HASKRNV*WPNGIRARIQFTSKRRRRSRIQLTPENKS 245
HA ++ W N I RI F R +R L PE K+
Sbjct: 119 HADQQIAIWLNNIPGRIYFNDPRLHHARAGLIPEFKT 155
>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
Length = 361
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 135 HASKRNV*WPNGIRARIQFTSKRRRRSRIQLTPENKS 245
HA ++ W N I RI F R +R L PE K+
Sbjct: 229 HADQQIAIWLNNIPGRIYFNDPRLHHARAGLIPEFKT 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,893,750
Number of Sequences: 59808
Number of extensions: 479748
Number of successful extensions: 1135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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