Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30777
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   7.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 162 AIIRSFSKRANSRRSCM 112
           A+IR+F++  N R SC+
Sbjct: 364 AVIRNFNESENRRNSCL 380


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 130 VRTLRKGTYDGQMGYGRESNLQASDVDVQESNLRRKIKVCL 252
           + T+   T +GQ G  R S+ Q +     +  LRR++K  L
Sbjct: 16  IYTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLKCAL 56


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 130 VRTLRKGTYDGQMGYGRESNLQASDVDVQESNLRRKIKVCL 252
           + T+   T +GQ G  R S+ Q +     +  LRR++K  L
Sbjct: 16  IYTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLKCAL 56


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 174 VSHLAIIRSFSKRANSRRSCMVVAIFHSINSASPTSTMAAITP 46
           +S   IIRS S+R + R S  +V      +S SP+ ++    P
Sbjct: 11  LSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQP 53


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 524 INEYTNISHESNSFSYRKRIDSK 456
           I E T+ISHE+N  +  K  D K
Sbjct: 863 IPEQTSISHENNQPTMNKCSDRK 885


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 509 NISHESNSFSYRKRIDS 459
           N+S +SNS  ++K ID+
Sbjct: 313 NVSRDSNSSDFKKLIDN 329


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 509 NISHESNSFSYRKRIDS 459
           N+S +SNS  ++K +D+
Sbjct: 313 NVSRDSNSSDFKKLVDN 329


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 337 YGARNKDRN*TFTSYHFVLVHKIQK 263
           YG+  K R+   T +  VLVH +++
Sbjct: 59  YGSNKKTRHMLPTGFRKVLVHNVKE 83


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 541 KYSRNNSKKNWYVNLN 588
           KY+ NN+ K  Y N+N
Sbjct: 97  KYNYNNNCKKLYYNIN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,433
Number of Sequences: 438
Number of extensions: 4863
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)