Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30777
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    31   1.2  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    30   1.6  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    29   3.6  

>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 127 RVRTLRKGTYDGQMGYGRESNLQASDVDVQESNLRRKIKVCLRNCSFVFYVLIQNDRM 300
           +V  LRK + +G +     S  +   +DV  + L  K+   L NCS + ++ + N+R+
Sbjct: 427 KVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNRI 484


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1388

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = -2

Query: 634  YGTFASYLYHSKILFSLG*HTNFFYYYFWNIYLIFCILMNIQTLVMKAIVFPTGNE*TVR 455
            Y  F S +Y   +   +G H +  Y  FW+ Y IFC L+      M  +V          
Sbjct: 1222 YSLFQSIIYVIIVYPMVGYHWSV-YKVFWSFYSIFCSLLIFNYFGMLLVVVTP------- 1273

Query: 454  HRLNIKTTFL*RHTFKATLLMFAG 383
               N+   F  R +F A + +FAG
Sbjct: 1274 ---NVHIAFTLRSSFYAIVNLFAG 1294


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -2

Query: 274 KIQKNSFEGTLLF--SGVSWILERRRRLLVNWILARIPFGHH 155
           ++ +N  +G+ +   + V W+ E+RR  LV W ++R+ FG+H
Sbjct: 196 RVYENVSDGSCIKIDNAVLWVDEKRRDYLVVWNISRL-FGYH 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,051
Number of Sequences: 28952
Number of extensions: 335155
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)