BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30777 (806 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g33050.1 68415.m04053 leucine-rich repeat family protein cont... 31 1.2 At4g15236.1 68417.m02335 ABC transporter family protein similar ... 30 1.6 At4g12820.1 68417.m02010 F-box family protein similar to F-box p... 29 3.6 >At2g33050.1 68415.m04053 leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593 Length = 800 Score = 30.7 bits (66), Expect = 1.2 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +1 Query: 127 RVRTLRKGTYDGQMGYGRESNLQASDVDVQESNLRRKIKVCLRNCSFVFYVLIQNDRM 300 +V LRK + +G + S + +DV + L K+ L NCS + ++ + N+R+ Sbjct: 427 KVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNRI 484 >At4g15236.1 68417.m02335 ABC transporter family protein similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, ABC1 protein [Nicotiana plumbaginifolia] GI:14331118; contains Pfam profile PF00005: ABC transporter Length = 1388 Score = 30.3 bits (65), Expect = 1.6 Identities = 24/84 (28%), Positives = 35/84 (41%) Frame = -2 Query: 634 YGTFASYLYHSKILFSLG*HTNFFYYYFWNIYLIFCILMNIQTLVMKAIVFPTGNE*TVR 455 Y F S +Y + +G H + Y FW+ Y IFC L+ M +V Sbjct: 1222 YSLFQSIIYVIIVYPMVGYHWSV-YKVFWSFYSIFCSLLIFNYFGMLLVVVTP------- 1273 Query: 454 HRLNIKTTFL*RHTFKATLLMFAG 383 N+ F R +F A + +FAG Sbjct: 1274 ---NVHIAFTLRSSFYAIVNLFAG 1294 >At4g12820.1 68417.m02010 F-box family protein similar to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana] Length = 442 Score = 29.1 bits (62), Expect = 3.6 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Frame = -2 Query: 274 KIQKNSFEGTLLF--SGVSWILERRRRLLVNWILARIPFGHH 155 ++ +N +G+ + + V W+ E+RR LV W ++R+ FG+H Sbjct: 196 RVYENVSDGSCIKIDNAVLWVDEKRRDYLVVWNISRL-FGYH 236 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,589,051 Number of Sequences: 28952 Number of extensions: 335155 Number of successful extensions: 820 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 820 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1833827200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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