Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30776
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.0  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   6.9  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   6.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 PDL-VNDVHVSMSKNSRQPYCVSKEAGHKPVLNHGVLDVL 291
           PD  + ++ V + +   + YC+    G    +N  V DVL
Sbjct: 318 PDAGLGNLSVCIDQQPWRSYCIQPPCGQLNPINPNVFDVL 357


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 271 DSALVCDQPPC 239
           +S  +CD PPC
Sbjct: 5   ESKAICDNPPC 15


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 133 HPAPSHSSLSTPTL 92
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 196 HVSMSKNSRQPYCVSKEAGHKPVL 267
           H +   ++ +P C+ +  GH P+L
Sbjct: 346 HKNTPYHTPEPDCIHELLGHMPLL 369


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 431 AGERPLRQRCCYRRPSARSRLEDTLFKDSRASP 529
           +GERP R R C +  S  S L   L   S   P
Sbjct: 73  SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 105


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 431 AGERPLRQRCCYRRPSARSRLEDTLFKDSRASP 529
           +GERP R R C +  S  S L   L   S   P
Sbjct: 329 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 361


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 PVRVQGAHPSGPGQ*CSRFYVQELEAAL 230
           PVR+ G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 345 HPDRTYEYHHHGH 307
           HP  T+ YH + H
Sbjct: 158 HPGMTFRYHFNVH 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,458
Number of Sequences: 336
Number of extensions: 2409
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)