Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30776
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   138   5e-34
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   138   6e-34
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   1.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.1  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    26   4.1  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   5.4  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.2  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  138 bits (334), Expect = 5e-34
 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQR 434
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN  ++
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120

Query: 435 ESGLCGNVAATGVPALVQG*RTHYL-KIPELPLVVE 539
              +   VAA+GVP+L+   R H + +IPE+PLVV+
Sbjct: 121 RYAIASAVAASGVPSLLLA-RGHRIEEIPEVPLVVD 155



 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 35/62 (56%), Positives = 46/62 (74%)
 Frame = +1

Query: 73  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 253 HK 258
           H+
Sbjct: 60  HQ 61


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  138 bits (333), Expect = 6e-34
 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQR 434
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN  ++
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120

Query: 435 ESGLCGNVAATGVPALVQG*RTHYL-KIPELPLVVE 539
              +   VAA+GVP+L+   R H + +IPE+PLVV+
Sbjct: 121 RYAISSAVAASGVPSLLLA-RGHRIEEIPEVPLVVD 155



 Score = 78.2 bits (184), Expect = 7e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +1

Query: 73  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 253 HK 258
           H+
Sbjct: 60  HQ 61


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 211  KNSRQPYCVSKEAGHKPVLNHGVLDVLSP 297
            ++  +PY ++ +  + P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 470 AGSSNVAAKAALPLSEVDATVPTPPGL 390
           +G+   AA A   LS VDA+VP P  +
Sbjct: 162 SGTGKTAAFALTMLSRVDASVPKPQAI 188


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 72  SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 182
           SI SP+ SVG + +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 312 GHAEFGRQHV--QYPMIQHWFV 253
           G++ F  +HV   +P ++HWFV
Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +1

Query: 124 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 258
           +QG+  P  F  +    P+ +   H   ++    PY   K+  HK
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHK 753


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 405 WHRRVNLRQRESGLCG 452
           WH R+N R RES L G
Sbjct: 446 WHFRINKRIRESSLHG 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,744
Number of Sequences: 5004
Number of extensions: 38510
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)