BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30776 (539 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 138 5e-34 SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 138 6e-34 SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.3 SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 3.1 SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 4.1 SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 5.4 SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 7.2 SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 9.5 SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.5 >SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 138 bits (334), Expect = 5e-34 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%) Frame = +3 Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQR 434 QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN ++ Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120 Query: 435 ESGLCGNVAATGVPALVQG*RTHYL-KIPELPLVVE 539 + VAA+GVP+L+ R H + +IPE+PLVV+ Sbjct: 121 RYAIASAVAASGVPSLLLA-RGHRIEEIPEVPLVVD 155 Score = 77.4 bits (182), Expect = 1e-15 Identities = 35/62 (56%), Positives = 46/62 (74%) Frame = +1 Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252 ++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59 Query: 253 HK 258 H+ Sbjct: 60 HQ 61 >SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 138 bits (333), Expect = 6e-34 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%) Frame = +3 Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQR 434 QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN ++ Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120 Query: 435 ESGLCGNVAATGVPALVQG*RTHYL-KIPELPLVVE 539 + VAA+GVP+L+ R H + +IPE+PLVV+ Sbjct: 121 RYAISSAVAASGVPSLLLA-RGHRIEEIPEVPLVVD 155 Score = 78.2 bits (184), Expect = 7e-16 Identities = 36/62 (58%), Positives = 46/62 (74%) Frame = +1 Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252 ++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59 Query: 253 HK 258 H+ Sbjct: 60 HQ 61 >SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1441 Score = 27.5 bits (58), Expect = 1.3 Identities = 9/29 (31%), Positives = 19/29 (65%) Frame = +1 Query: 211 KNSRQPYCVSKEAGHKPVLNHGVLDVLSP 297 ++ +PY ++ + + P+ N G LD++SP Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082 >SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 26.2 bits (55), Expect = 3.1 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57 A C V ++SEYT G ++ L++L+ Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515 >SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces pombe|chr 2|||Manual Length = 503 Score = 25.8 bits (54), Expect = 4.1 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 470 AGSSNVAAKAALPLSEVDATVPTPPGL 390 +G+ AA A LS VDA+VP P + Sbjct: 162 SGTGKTAAFALTMLSRVDASVPKPQAI 188 >SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizosaccharomyces pombe|chr 1|||Manual Length = 532 Score = 25.4 bits (53), Expect = 5.4 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +3 Query: 72 SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 182 SI SP+ SVG + + D + S + P+ + G P Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348 >SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 361 Score = 25.0 bits (52), Expect = 7.2 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%) Frame = -3 Query: 312 GHAEFGRQHV--QYPMIQHWFV 253 G++ F +HV +P ++HWFV Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341 >SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 767 Score = 24.6 bits (51), Expect = 9.5 Identities = 11/45 (24%), Positives = 19/45 (42%) Frame = +1 Query: 124 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 258 +QG+ P F + P+ + H ++ PY K+ HK Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHK 753 >SPAC4G9.04c |||cleavage and polyadenylation specificity factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 24.6 bits (51), Expect = 9.5 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +3 Query: 405 WHRRVNLRQRESGLCG 452 WH R+N R RES L G Sbjct: 446 WHFRINKRIRESSLHG 461 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,040,744 Number of Sequences: 5004 Number of extensions: 38510 Number of successful extensions: 121 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 119 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 221892220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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