Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30776
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 150 6e-37
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 37 0.009
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 37 0.012
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.11
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.46
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 30 1.4
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 2.4
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 2.4
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.4
SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 29 3.2
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 4.2
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 4.2
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 5.6
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_47383| Best HMM Match : LON (HMM E-Value=1.3) 27 7.4
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 150 bits (364), Expect = 6e-37
Identities = 68/95 (71%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQR 434
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH +VN++QR
Sbjct: 58 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQR 117
Query: 435 ESGLCGNVAATGVPALVQG*RTHYL-KIPELPLVV 536
+C +AA+ +PAL+ R H + KI E+PLV+
Sbjct: 118 RFAVCSALAASALPALIMA-RGHRIEKIAEVPLVI 151
Score = 70.9 bits (166), Expect = 6e-13
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +1
Query: 82 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 258
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGH+
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 404
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +3
Query: 243 GGWSQTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 398
GG + WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 404
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 256
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 375 YVHHDTCYRRHPDRTYEYHHHGH 307
Y HH CY RH + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 407 APSRQPPTAGERPLRQRCCYRRPSARSRLEDTLFKDSRASP 529
+PS PP A +PL+++ R+ + R +E T K + +P
Sbjct: 384 SPSTSPPKANRQPLKKKLSARKSNERGGVEKTRSKSEKVAP 424
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 354 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 262
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 354 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 262
Y +HP T+ YHH H + ++ Q+P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 354 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 262
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 345 HPDRTYEYHHHGHAEFGRQHVQYPMIQH 262
HP T+ YH H R H Q+P + H
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIH 432
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 286
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFVTSLL 241
HH + RH R + YHHH + H +P FVT+++
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHYP----HHHHHPCTIIIFVTTII 608
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 378 TYVHHDTCYRRHPDRTYEYHHHGHA 304
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -3
Query: 381 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 277
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 210 QELEAALLREQGGWSQTSAESWGTGRA----VARIPR-VRGGGTHRS 335
+ E+AL E+ W+Q AES T RA +AR+ R GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 258 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 374
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1428
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 276 GTGRAVARIPRVRGGGTHRSGQGAF-GNMCR--GGRMFAPTKPWRRWHRRVNLRQRESG 443
GT + + P R G H+ + G +C G APT P W R VN +RE G
Sbjct: 737 GTEETLDQCPHQRVEGRHKCSRFTLAGVVCEMYGPTSAAPTPPPYVWVRLVNGNRREEG 795
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 369 HHDTCYRRHPDRTYEYHHH 313
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 149 GRGLAAPCTVSLFSEYTDTKGRATDRLI 66
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 375 YVHHDTCYRRHPDRTYEYHHHGH 307
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 369 HHDTCYRRHPDRTYEYHHHGH 307
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 357 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 262
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = -3
Query: 381 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFVTSLL 241
R + HH ++ + + + +HHH H H Q+ H + +++
Sbjct: 256 RYHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHIINII 302
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 378 TYVHHDTCYRRHPDRTYEYHHHGHA 304
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
Length = 1528
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 440 RPLRQRCCYRRPSARSRLEDTLFKDSR 520
+ ++Q+ R P R +L+DTLF D R
Sbjct: 714 KQVQQQGIQRSPLTRQKLQDTLFNDDR 740
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 333 TYEYHHHGHAEFGRQHVQYPMI-QHWFVTSLLAHAVGLP-RVLGHRNVN 193
+Y++HHHG E Q V I + W L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = -3
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFVT 250
HH + H +++ HH H QH + H +T
Sbjct: 6 HHHHDHHHHDHHHHDHQHHDHQHHDHQHHDHHHHDHHHMT 45
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = +3
Query: 282 GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT--KPWRRWHRRVNLRQRESGLCGN 455
GR V RV+G GT G G G CR T K W + + G CG
Sbjct: 214 GRVVRDAGRVKGCGTCGKGCGTCGKRCRTCYAGCGTCGKGWGTCGKGCRTSGKGCGTCGK 273
Query: 456 VAAT 467
T
Sbjct: 274 GCGT 277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,102,780
Number of Sequences: 59808
Number of extensions: 331498
Number of successful extensions: 1147
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -