Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30775
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 153 2e-38
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 53 4e-08
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 40 4e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 37 0.004
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.007
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.016
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 35 0.016
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 33 0.049
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 33 0.049
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.46
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.46
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.61
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.80
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.80
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 29 0.80
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 29 1.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 1.4
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 1.4
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 4.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 4.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 4.3
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 4.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.7
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 9.9
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 153 bits (372), Expect = 2e-38
Identities = 61/70 (87%), Positives = 64/70 (91%)
Frame = +1
Query: 511 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 690
VDNCAICRNHIMDLCIECQAN SA ++ECTVAWG CNHAFHFHCISRWL TR VCPLDN
Sbjct: 38 VDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDN 97
Query: 691 REWEFQKYGH 720
REWEFQ+YGH
Sbjct: 98 REWEFQRYGH 107
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 458 RFEVKKWNAVALWAWDIL 511
RFE+KKWNAVALW WDI+
Sbjct: 20 RFEIKKWNAVALWQWDIV 37
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 514 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL 684
D C ICR C +C ++ + C + WG C H FH HCI WL T + CP+
Sbjct: 22 DVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPM 76
Query: 685 DNR 693
D +
Sbjct: 77 DRQ 79
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 39.9 bits (89), Expect = 4e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPLDNR 693
C H HFHC+ WL+ +Q CP+ R
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 580 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 699
S+T + +A C H FH HC+ W + CPL E+
Sbjct: 43 SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEF 82
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.9 bits (79), Expect = 0.007
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPL 684
C+H +H C+ +W++TR +CP+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 553 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 684
C+ C +N ++EC CNH FH CI +WL + Q CPL
Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 547 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREW 699
D CI C A+ A + + C H FH CI W+ T + CPL N ++
Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 33.1 bits (72), Expect = 0.049
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 526 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 702
+ + +MDL C C + ++ T C H F +C+ +WL+ CPL +E
Sbjct: 97 LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
Query: 703 FQKYG 717
+ G
Sbjct: 155 HETVG 159
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 33.1 bits (72), Expect = 0.049
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 556 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNRE 696
+EC S T + VA C H FH CI++W+ R CP N E
Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +1
Query: 613 GVCNHAFHFHCISRWLKTRQV--CPLDNREWEF 705
G C H FH C+ +W K+ CPL + F
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +1
Query: 586 TSEECTVAW--GVCNHAFHFHCISRWLK 663
T T W G C H FH CI +W K
Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKT-RQVCPL 684
C H FH CI +WL T CPL
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.61
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPL 684
C H FH +CI WL+ C +
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 29.1 bits (62), Expect = 0.80
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 619 CNH-AFHFHCISRWLKTRQVCPLDNREWEFQKYG 717
C H F + CI RW+ CP+ R + YG
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYG 70
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.80
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCP 681
C H + + C+ WLK + CP
Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.80
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPLDNREWE 702
C H H S W T +CP+ N + E
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 566 KQIKPQPLVKNAQLLGVFVIMHSISTVFPVG*RLDKFVH*TIENGSSKSMVIKCHLEELH 745
++I P P+++ + + +V H I + ++D + NG+ KS ++K +E+LH
Sbjct: 511 EKISP-PILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLH 569
Query: 746 PAQEFESSEHRELTCQY 796
P S H L Y
Sbjct: 570 PTSGI-VSRHPRLRIAY 585
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 553 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 657
C+ C S+ + T+ VC H FH C+ +W
Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 616 VCNHAFHFHCISRWLKTRQ-VCPLDNR 693
+C H F + CI + ++TRQ CP+ R
Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPICGR 668
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPL 684
C H F + CI+ W + CPL
Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 3 KIPWLIYSLHFQWGGCGNLFC 65
K+ WLI L+ + G GNL C
Sbjct: 243 KLEWLIQGLNCEKGSIGNLLC 263
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 476 WNAVALWAWDILSTTVLFAEIT*WICVSNAKQIKPQPLVKNAQLLGVFVIMHSISTVFPV 655
W +V+L + + +L A I WI V K +PL+K +L +F I++ TVF
Sbjct: 527 WTSVSLGG-AVATLLMLLATIFEWIHVPR-KFPGSRPLLKRFLILILFFILNVAPTVFVF 584
Query: 656 G 658
G
Sbjct: 585 G 585
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPL 684
C H + C+ WLK CP+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 619 CNHAFHFHCISRW-LKTRQVCPL 684
C+H FH CI + LK +CPL
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 556 YTDPLCDFGK*HSCRQNIPSPECYCIPLFYFESFFISF 443
YTDP + ++ ++N P L YFE FF+ F
Sbjct: 972 YTDPFIPYSTDYT-KKNPKEPTADVNSLSYFEKFFVLF 1008
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 715 HTFGTP-ILYCLVDKLVESSTNGKYSGNG 632
H G P L+ +D+ +E KY GNG
Sbjct: 752 HRIGEPEYLFTRIDESMEEEWRSKYGGNG 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,552
Number of Sequences: 5004
Number of extensions: 75132
Number of successful extensions: 218
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -