Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30775
(829 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 36 0.040
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 33 0.21
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 32 0.49
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 32 0.49
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 31 0.86
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 31 0.86
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 30 2.6
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 30 2.6
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 30 2.6
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 30 2.6
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 29 4.6
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11) 29 6.1
>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 39.5 bits (88), Expect = 0.003
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 443 KGDKKRFEVKKWNAVALWAWDILSTTVLFAEI 538
K +K F +KKWNA+A+W+WD+ T +
Sbjct: 25 KESQKMFSLKKWNAIAMWSWDVECDTCAICRV 56
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 38.7 bits (86), Expect = 0.006
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPLDNR 693
C H FH CI WL T+ +CP+D +
Sbjct: 230 CRHVFHRDCIDSWLATQSICPVDGQ 254
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 35.9 bits (79), Expect = 0.040
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 520 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNRE 696
C I D+C+ C A S + + C H FH CI WL T CPLD E
Sbjct: 246 CVTVNEGIDDVCLICMEEYAVGDS----MKYLPCRHNFHSACIRTWLTYTSCKCPLDGLE 301
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +1
Query: 520 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 681
C++ R M C EC CT+ C H+FH HCI WL P
Sbjct: 546 CSVGRPSWMIPCGECVIC-LDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAP 598
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 32.3 bits (70), Expect = 0.49
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPL 684
C+H+F +C+ WL+ R CP+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPI 407
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 32.3 bits (70), Expect = 0.49
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 619 CNHAFHFHCISRWLK 663
CNH FH CI RWLK
Sbjct: 379 CNHDFHSKCIDRWLK 393
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 31.9 bits (69), Expect = 0.65
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 619 CNHAFHFHCISRWL-KTRQVCPLDNREWEFQK 711
C+HA+H C+ WL + ++ CP+ R E K
Sbjct: 319 CDHAYHCKCVDPWLTEGKRTCPVCKRPVETSK 350
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 31.5 bits (68), Expect = 0.86
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPL 684
C H FH C+ WL + CPL
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPL 253
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 31.5 bits (68), Expect = 0.86
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 616 VCNHAFHFHCISRWLKTRQVCPL 684
VC H + C+SRWL+ CP+
Sbjct: 279 VCGHKYCEPCLSRWLENNTTCPI 301
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPLDNRE 696
C+H FH CI WL+ CP+ E
Sbjct: 80 CDHLFHPGCILPWLEKTNSCPVCRHE 105
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 708
C H +H CI +WLK R D +W+ +
Sbjct: 311 CLHEYHTRCIDKWLKNR-----DQSQWKLE 335
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Frame = +1
Query: 514 DNCAICRNHIMD-----LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 678
++C IC+ + + C C + C H F CIS W Q C
Sbjct: 459 NSCPICQEELAEPIMLRTCKVCFVMPTCQVKLAKQIMLRTCKHIFCEDCISLWFDREQTC 518
Query: 679 PL 684
P+
Sbjct: 519 PM 520
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 505 YFVDNCAIC-RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 645
++ D+ C R+H L C A +E+CT A C H HF C
Sbjct: 123 FYKDSKVYCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCC 170
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 559 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 681
EC + S+ +++ C H+F C S+W++ + CP
Sbjct: 61 ECYDVNVTLMSDSFSISLQPCMHSFCASCYSQWMEHSRDCP 101
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 616 VCNHAFHFHCISRWLKT---RQVCPL 684
+C H F + C+ RWL+T R +CP+
Sbjct: 77 MCGHLFCWPCLHRWLETRPNRSMCPV 102
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 619 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH*MSFRRAASCTGV*IF*T*GINMSIS 798
C H+F CI R+L+T CP+ + E K ++ RR + + IF T + S S
Sbjct: 64 CLHSFCRCCIVRYLETSYRCPVCDA--EIHKTRPLLNIRRRKNTSEQQIFPTRYLRCSSS 121
Query: 799 IKFVIIK 819
+ +IK
Sbjct: 122 VTVSVIK 128
>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
Length = 1068
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +1
Query: 463 RSKKVECSSTLGLGYFVDNCAICRNHIMDLCIECQANQASATSEECTVAWG 615
+ K V C LG G VD C +C C S T + CT +WG
Sbjct: 535 KCKPVGCDGVLGSGQHVDRCGVCNGD----SSTCSVVTGSYT-QSCT-SWG 579
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,498,592
Number of Sequences: 59808
Number of extensions: 569244
Number of successful extensions: 1240
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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