BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30775 (829 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 24 2.0 Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 23 3.4 AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. 23 4.6 DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 8.0 DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 8.0 DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 8.0 DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 8.0 >AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice variant B protein. Length = 810 Score = 23.8 bits (49), Expect = 2.0 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -2 Query: 666 SLQPTGNTVEMECMITNT 613 S +P NTVE C++ NT Sbjct: 473 STRPKSNTVENACVLKNT 490 >Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 protein. Length = 402 Score = 23.0 bits (47), Expect = 3.4 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +3 Query: 498 LGIFCRQLCYLPK 536 LGI+CR CY K Sbjct: 209 LGIYCRLYCYAQK 221 >AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. Length = 50 Score = 22.6 bits (46), Expect = 4.6 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +3 Query: 531 PKSHNGSVY 557 PK HNGS+Y Sbjct: 31 PKDHNGSIY 39 >DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride channel variant 4 protein. Length = 489 Score = 21.8 bits (44), Expect = 8.0 Identities = 8/34 (23%), Positives = 18/34 (52%) Frame = +2 Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580 N A+ WD + ++A + ++CV+ + +P Sbjct: 359 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 392 >DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride channel variant 3 protein. Length = 475 Score = 21.8 bits (44), Expect = 8.0 Identities = 8/34 (23%), Positives = 18/34 (52%) Frame = +2 Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580 N A+ WD + ++A + ++CV+ + +P Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 361 >DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride channel variant 1 protein. Length = 509 Score = 21.8 bits (44), Expect = 8.0 Identities = 8/34 (23%), Positives = 18/34 (52%) Frame = +2 Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580 N A+ WD + ++A + ++CV+ + +P Sbjct: 379 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 412 >DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride channel protein. Length = 458 Score = 21.8 bits (44), Expect = 8.0 Identities = 8/34 (23%), Positives = 18/34 (52%) Frame = +2 Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580 N A+ WD + ++A + ++CV+ + +P Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 361 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 238,744 Number of Sequences: 438 Number of extensions: 5206 Number of successful extensions: 12 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 26460186 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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