Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30775
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.4  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   4.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 666 SLQPTGNTVEMECMITNT 613
           S +P  NTVE  C++ NT
Sbjct: 473 STRPKSNTVENACVLKNT 490


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 498 LGIFCRQLCYLPK 536
           LGI+CR  CY  K
Sbjct: 209 LGIYCRLYCYAQK 221


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 531 PKSHNGSVY 557
           PK HNGS+Y
Sbjct: 31  PKDHNGSIY 39


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580
           N  A+  WD +    ++A +  ++CV+   + +P
Sbjct: 359 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 392


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580
           N  A+  WD +    ++A +  ++CV+   + +P
Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 361


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580
           N  A+  WD +    ++A +  ++CV+   + +P
Sbjct: 379 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 412


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 479 NAVALWAWDILSTTVLFAEIT*WICVSNAKQIKP 580
           N  A+  WD +    ++A +  ++CV+   + +P
Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,744
Number of Sequences: 438
Number of extensions: 5206
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)