Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30774
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    30   0.49 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   6.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   8.0  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 726 PT-PCIFPKTSALPVEKPVP*PGRKTSGLNPLKYTF 830
           PT P + P TS+ P++ P+P P R  S  NP   +F
Sbjct: 186 PTEPSVEPPTSSFPIQPPLP-PSRSISISNPQSLSF 220


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 647 RFPYMCLLLYPVYKEVQVPVKVHVDRPYPV 736
           R PY+C  ++  Y  + +   +HV   +P+
Sbjct: 111 RLPYLCNAIWSFYTTIVILAVLHVTHVFPI 140


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 363 LFYRVGDVLFDGVGNRNFLNDSY 295
           L  +VGD  F  VGN N LN +Y
Sbjct: 38  LIEKVGDETFRWVGNENELNGAY 60


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 742 FPKPVPYPSRSPSHNP 789
           FP+PVP+    P H P
Sbjct: 180 FPRPVPHNGTKPDHKP 195



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 742 FPKPVPYPSRSPSHNP 789
           FP+PVP+    P H P
Sbjct: 207 FPRPVPHNGTKPDHKP 222



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 742 FPKPVPYPSRSPSHNP 789
           FP+PVP+    P H P
Sbjct: 236 FPRPVPHNGTKPDHKP 251



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 742 FPKPVPYPSRSPSHNP 789
           FP+PVP+    P H P
Sbjct: 265 FPRPVPHNGTKPDHKP 280



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 742 FPKPVPYPSRSPSHNP 789
           FP+PVP+    P H P
Sbjct: 319 FPRPVPHNGTKPDHKP 334



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 742 FPKPVPYPSRSPSHNP 789
           FP+PVP+    P H P
Sbjct: 402 FPRPVPHNGTKPDHKP 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,251
Number of Sequences: 5004
Number of extensions: 57691
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)