Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30774
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 33 0.30
04_04_0347 + 24564589-24565296 32 0.68
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 31 0.90
04_03_0904 + 20717005-20718087 30 2.1
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 4.8
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 29 4.8
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 29 6.4
05_03_0039 - 7621613-7622695 29 6.4
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 29 6.4
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 28 8.4
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.4
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 8.4
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.4
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 736 AYFPKPVPYPSRSPSHNP-VEKPVALT 813
+YFPKP+P SR PS P V++P+A++
Sbjct: 383 SYFPKPLPPRSRRPSFPPLVQQPIAMS 409
>04_04_0347 + 24564589-24565296
Length = 235
Score = 31.9 bits (69), Expect = 0.68
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRA-YFPKPVPYPSRSPSHNPVEKP 801
P H PAP P + GT++ P Y P P P R S P P
Sbjct: 135 PAHAPAPAPAVIHGTNSHLAPAPAPSSHVQYSPAPTPGDGRHQSPPPPPSP 185
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 31.5 bits (68), Expect = 0.90
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +1
Query: 589 SKCTCPLLTQ*RRKYLYPVKVPVHV-PAPLPRIQRGT--STSKGPCG*TLPRAYFPKPVP 759
S P + R L P K P + PA P++ ST +LP A P P P
Sbjct: 146 SHAKTPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSP 205
Query: 760 YPSRSPSHNPVEKPV-ALTR*STRL-TAQCPSMLKKP 864
P P H+P + P A + T L A P+ + KP
Sbjct: 206 SPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKP 242
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +1
Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801
P + P P P T P P Y P P P P++ P KP
Sbjct: 83 PTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKP 132
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +1
Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALT 813
P P P P P T S P P Y P P P PS P P P T
Sbjct: 156 PTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTP-PSYKPQPKPTPTPYTPT 212
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 321 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 446
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 724 TLPRAYFPKPVPYPSRSPSHNPV 792
+LPR FP P P P R P +P+
Sbjct: 102 SLPRLPFPLPFPLPLRRPRRSPI 124
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 775 GFSTGKA-LVLGNMHGVGSIHMDLYWYLY 692
GFS GK+ L+LG GVGS+ + L ++Y
Sbjct: 227 GFSAGKSILILGGAGGVGSLAIQLAKHVY 255
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +1
Query: 625 RKYLYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKP 801
+ Y P P VP P P G P P+ + PKP P P P P KP
Sbjct: 261 KPYPKPKPEPKPVPKPKPIPHPGPKPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPEPKP 320
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +1
Query: 634 LYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY---FPKPVPYPSRSPSHNPVEKP 801
L+P P P P P+++ P P P+P PYP P PV KP
Sbjct: 218 LHPKPEPKPHPEPEPKLKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPKPKPEPKPVPKP 276
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 270 RARGGPQNRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RD 443
R R +R R S PRR P G++ NP P RSP P+ + P P D
Sbjct: 206 RGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNPSPN-GRRSPRSPQDRVSPPPKDND 263
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 575 FLFNGVRFWHIYLDGDGSVDWD 510
F+ NG + H+++DG S+ WD
Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 670 PLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801
P P + GTS S G P+A P P P P+ +P P P
Sbjct: 187 PPPADEDGTSASAGA---PPPQAPLPPPAPVPAPAPPPPPAAAP 227
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 664 PAPLPRIQRGTSTSKGPCG*TLPRAYFPK--PVPYPSRSPSHNPVEKPVALTR*STRLTA 837
PA ++ G TS+ + R +P+ P P P+ SPS +P+ + +A R S R
Sbjct: 23 PAVAEAVEEGPVTSRWAPEIRVYRRKYPRKNPKPPPNPSPSSSPLAQTLASIRRSIRRPE 82
Query: 838 QCPS 849
P+
Sbjct: 83 DGPA 86
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 327 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 428
PRR A P GR +P P S RSP PR P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768,549
Number of Sequences: 37544
Number of extensions: 457226
Number of successful extensions: 1952
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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