BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30774 (867 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 33 0.30 04_04_0347 + 24564589-24565296 32 0.68 01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 31 0.90 04_03_0904 + 20717005-20718087 30 2.1 11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 4.8 10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 29 4.8 08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 29 6.4 05_03_0039 - 7621613-7622695 29 6.4 03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 29 6.4 08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 28 8.4 03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.4 02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 8.4 01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.4 >01_07_0232 + 42182942-42183490,42183593-42183661,42184320-42184451, 42184547-42184600,42184714-42184758,42185383-42185522, 42185777-42185902,42185985-42186002,42186631-42187276, 42188121-42188843 Length = 833 Score = 33.1 bits (72), Expect = 0.30 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%) Frame = +1 Query: 736 AYFPKPVPYPSRSPSHNP-VEKPVALT 813 +YFPKP+P SR PS P V++P+A++ Sbjct: 383 SYFPKPLPPRSRRPSFPPLVQQPIAMS 409 >04_04_0347 + 24564589-24565296 Length = 235 Score = 31.9 bits (69), Expect = 0.68 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Frame = +1 Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRA-YFPKPVPYPSRSPSHNPVEKP 801 P H PAP P + GT++ P Y P P P R S P P Sbjct: 135 PAHAPAPAPAVIHGTNSHLAPAPAPSSHVQYSPAPTPGDGRHQSPPPPPSP 185 >01_03_0117 + 12684729-12685886,12685978-12686145,12686292-12686336, 12686438-12687280 Length = 737 Score = 31.5 bits (68), Expect = 0.90 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 5/97 (5%) Frame = +1 Query: 589 SKCTCPLLTQ*RRKYLYPVKVPVHV-PAPLPRIQRGT--STSKGPCG*TLPRAYFPKPVP 759 S P + R L P K P + PA P++ ST +LP A P P P Sbjct: 146 SHAKTPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSP 205 Query: 760 YPSRSPSHNPVEKPV-ALTR*STRL-TAQCPSMLKKP 864 P P H+P + P A + T L A P+ + KP Sbjct: 206 SPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKP 242 >04_03_0904 + 20717005-20718087 Length = 360 Score = 30.3 bits (65), Expect = 2.1 Identities = 15/50 (30%), Positives = 18/50 (36%) Frame = +1 Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801 P + P P P T P P Y P P P P++ P KP Sbjct: 83 PTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKP 132 Score = 29.1 bits (62), Expect = 4.8 Identities = 19/58 (32%), Positives = 19/58 (32%) Frame = +1 Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALT 813 P P P P P T S P P Y P P P PS P P P T Sbjct: 156 PTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTP-PSYKPQPKPTPTPYTPT 212 >11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 Length = 576 Score = 29.1 bits (62), Expect = 4.8 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = +3 Query: 321 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 446 S R++ P P +K P P + P R CPLP+ R C Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571 >10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 Length = 407 Score = 29.1 bits (62), Expect = 4.8 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 724 TLPRAYFPKPVPYPSRSPSHNPV 792 +LPR FP P P P R P +P+ Sbjct: 102 SLPRLPFPLPFPLPLRRPRRSPI 124 >08_02_0503 - 17848739-17849004,17849109-17849268,17849368-17849691, 17849787-17850209 Length = 390 Score = 28.7 bits (61), Expect = 6.4 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -3 Query: 775 GFSTGKA-LVLGNMHGVGSIHMDLYWYLY 692 GFS GK+ L+LG GVGS+ + L ++Y Sbjct: 227 GFSAGKSILILGGAGGVGSLAIQLAKHVY 255 >05_03_0039 - 7621613-7622695 Length = 360 Score = 28.7 bits (61), Expect = 6.4 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Frame = +1 Query: 625 RKYLYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKP 801 + Y P P VP P P G P P+ + PKP P P P P KP Sbjct: 261 KPYPKPKPEPKPVPKPKPIPHPGPKPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPEPKP 320 Score = 28.3 bits (60), Expect = 8.4 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Frame = +1 Query: 634 LYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY---FPKPVPYPSRSPSHNPVEKP 801 L+P P P P P+++ P P P+P PYP P PV KP Sbjct: 218 LHPKPEPKPHPEPEPKLKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPKPKPEPKPVPKP 276 >03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335, 9824454-9824567,9824711-9824774,9825206-9825312 Length = 344 Score = 28.7 bits (61), Expect = 6.4 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +3 Query: 270 RARGGPQNRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RD 443 R R +R R S PRR P G++ NP P RSP P+ + P P D Sbjct: 206 RGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNPSPN-GRRSPRSPQDRVSPPPKDND 263 >08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 Length = 382 Score = 28.3 bits (60), Expect = 8.4 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -2 Query: 575 FLFNGVRFWHIYLDGDGSVDWD 510 F+ NG + H+++DG S+ WD Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153 >03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021, 5103670-5104577 Length = 538 Score = 28.3 bits (60), Expect = 8.4 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 670 PLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801 P P + GTS S G P+A P P P P+ +P P P Sbjct: 187 PPPADEDGTSASAGA---PPPQAPLPPPAPVPAPAPPPPPAAAP 227 >02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841, 8491959-8492014 Length = 656 Score = 28.3 bits (60), Expect = 8.4 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +1 Query: 664 PAPLPRIQRGTSTSKGPCG*TLPRAYFPK--PVPYPSRSPSHNPVEKPVALTR*STRLTA 837 PA ++ G TS+ + R +P+ P P P+ SPS +P+ + +A R S R Sbjct: 23 PAVAEAVEEGPVTSRWAPEIRVYRRKYPRKNPKPPPNPSPSSSPLAQTLASIRRSIRRPE 82 Query: 838 QCPS 849 P+ Sbjct: 83 DGPA 86 >01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668, 2986798-2986893,2987003-2987042,2987760-2987887 Length = 305 Score = 28.3 bits (60), Expect = 8.4 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +3 Query: 327 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 428 PRR A P GR +P P S RSP PR P+ Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,768,549 Number of Sequences: 37544 Number of extensions: 457226 Number of successful extensions: 1952 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1762 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2432722788 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -