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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30774
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    33   0.30 
04_04_0347 + 24564589-24565296                                         32   0.68 
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    31   0.90 
04_03_0904 + 20717005-20718087                                         30   2.1  
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793     29   4.8  
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     29   4.8  
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496...    29   6.4  
05_03_0039 - 7621613-7622695                                           29   6.4  
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    29   6.4  
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785     28   8.4  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    28   8.4  
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849...    28   8.4  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   8.4  

>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 736 AYFPKPVPYPSRSPSHNP-VEKPVALT 813
           +YFPKP+P  SR PS  P V++P+A++
Sbjct: 383 SYFPKPLPPRSRRPSFPPLVQQPIAMS 409


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +1

Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRA-YFPKPVPYPSRSPSHNPVEKP 801
           P H PAP P +  GT++   P         Y P P P   R  S  P   P
Sbjct: 135 PAHAPAPAPAVIHGTNSHLAPAPAPSSHVQYSPAPTPGDGRHQSPPPPPSP 185


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
 Frame = +1

Query: 589 SKCTCPLLTQ*RRKYLYPVKVPVHV-PAPLPRIQRGT--STSKGPCG*TLPRAYFPKPVP 759
           S    P +    R  L P K P  + PA  P++      ST       +LP A  P P P
Sbjct: 146 SHAKTPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSP 205

Query: 760 YPSRSPSHNPVEKPV-ALTR*STRL-TAQCPSMLKKP 864
            P   P H+P + P  A  +  T L  A  P+ + KP
Sbjct: 206 SPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKP 242


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = +1

Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801
           P + P P P     T     P     P  Y P P P     P++ P  KP
Sbjct: 83  PTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKP 132



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALT 813
           P   P   P P P     T  S  P     P  Y P P P PS  P   P   P   T
Sbjct: 156 PTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTP-PSYKPQPKPTPTPYTPT 212


>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
          Length = 576

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 321 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 446
           S  R++  P P +K  P P  +   P      R   CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571


>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 724 TLPRAYFPKPVPYPSRSPSHNPV 792
           +LPR  FP P P P R P  +P+
Sbjct: 102 SLPRLPFPLPFPLPLRRPRRSPI 124


>08_02_0503 -
           17848739-17849004,17849109-17849268,17849368-17849691,
           17849787-17850209
          Length = 390

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 775 GFSTGKA-LVLGNMHGVGSIHMDLYWYLY 692
           GFS GK+ L+LG   GVGS+ + L  ++Y
Sbjct: 227 GFSAGKSILILGGAGGVGSLAIQLAKHVY 255


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = +1

Query: 625 RKYLYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKP 801
           + Y  P   P  VP P P    G      P     P+ +  PKP P P   P   P  KP
Sbjct: 261 KPYPKPKPEPKPVPKPKPIPHPGPKPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPEPKP 320



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 634 LYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY---FPKPVPYPSRSPSHNPVEKP 801
           L+P   P   P P P+++        P     P       P+P PYP   P   PV KP
Sbjct: 218 LHPKPEPKPHPEPEPKLKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPKPKPEPKPVPKP 276


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 270 RARGGPQNRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RD 443
           R R    +R  R  S    PRR   P   G++ NP P    RSP  P+ +  P P   D
Sbjct: 206 RGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNPSPN-GRRSPRSPQDRVSPPPKDND 263


>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
          Length = 382

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 575 FLFNGVRFWHIYLDGDGSVDWD 510
           F+ NG  + H+++DG  S+ WD
Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 670 PLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801
           P P  + GTS S G      P+A  P P P P+ +P   P   P
Sbjct: 187 PPPADEDGTSASAGA---PPPQAPLPPPAPVPAPAPPPPPAAAP 227


>02_02_0277 +
           8489717-8491468,8491571-8491610,8491719-8491841,
           8491959-8492014
          Length = 656

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 664 PAPLPRIQRGTSTSKGPCG*TLPRAYFPK--PVPYPSRSPSHNPVEKPVALTR*STRLTA 837
           PA    ++ G  TS+      + R  +P+  P P P+ SPS +P+ + +A  R S R   
Sbjct: 23  PAVAEAVEEGPVTSRWAPEIRVYRRKYPRKNPKPPPNPSPSSSPLAQTLASIRRSIRRPE 82

Query: 838 QCPS 849
             P+
Sbjct: 83  DGPA 86


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 327 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 428
           PRR A P  GR  +P P  S RSP  PR    P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768,549
Number of Sequences: 37544
Number of extensions: 457226
Number of successful extensions: 1952
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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