Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30774
(867 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 36 0.057
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 31 1.6
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 31 1.6
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 30 2.1
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 30 2.8
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 29 3.7
SB_45107| Best HMM Match : efhand (HMM E-Value=1.9e-07) 29 4.9
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 29 4.9
SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081) 29 4.9
SB_21164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 6.5
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 29 6.5
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 29 6.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 28 8.6
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 28 8.6
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 35.5 bits (78), Expect = 0.057
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Frame = +1
Query: 646 KVPVHVPA--PLPRIQRGTST----SKGPCG*TLPRAYFP--KPVPYPSRSPSHNPVEKP 801
++P H+P P+P + R T+ P LP + P +PVP +R P+H P+E+P
Sbjct: 393 RLPTHLPLERPVPAVTRFTTPLPLERPVPAVTRLP-THLPLERPVPAVTRLPTHLPLEQP 451
Query: 802 V-ALTR*STRLTAQCP 846
V A+TR T L + P
Sbjct: 452 VPAVTRLPTHLPLERP 467
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV-ALTR 816
PV +P LP + + ++ P L R PVP +R P+H P+E+PV A+TR
Sbjct: 339 PVPAVTRLPTHLPLERPVPAVTRLPTDLPLER-----PVPAVTRLPTHLPLERPVPAVTR 393
Query: 817 *STRLTAQCP 846
T L + P
Sbjct: 394 LPTHLPLERP 403
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV-ALTR 816
PV +P LP + + ++ P L R PVP +R P+H P+E+PV A+TR
Sbjct: 355 PVPAVTRLPTDLPLERPVPAVTRLPTHLPLER-----PVPAVTRLPTHLPLERPVPAVTR 409
Query: 817 *STRLTAQCP 846
+T L + P
Sbjct: 410 FTTPLPLERP 419
Score = 33.1 bits (72), Expect = 0.30
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 562 PLKRKFMFQSKCTCPLLTQ*RRKYLYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY 741
PL+R ++ PLL + PV H+PA LP + ++ P L R
Sbjct: 511 PLERPVPAVTRLPTPLLLE------RPVPAVTHLPAHLPLEWPVPAVTRLPTHLPLER-- 562
Query: 742 FPKPVPYPSRSPSHNPVEKPV-ALTR*STRL 831
PVP +R P+H P+ +PV A+TR T L
Sbjct: 563 ---PVPAVTRLPTHLPLGRPVPAVTRLPTHL 590
Score = 33.1 bits (72), Expect = 0.30
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +1
Query: 646 KVPVHVPA--PLPRIQRGTS----TSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKPV 804
++P H+P P+P + R T+ P LP +PVP +R P+H P+E+PV
Sbjct: 585 RLPTHLPLGRPVPAVTRFTTYLPLERPVPAVTRLPTPLPLERPVPAVTRLPTHLPLEQPV 644
Query: 805 -ALTR*STRLTAQCP 846
A+T T L + P
Sbjct: 645 PAVTSLPTHLPLERP 659
Score = 32.3 bits (70), Expect = 0.53
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Frame = +1
Query: 526 PSPSRYMCQNLTPLKRKFMFQSKCTCPLLTQ*RRKYLYPVKVPVHVPA--PLPRIQRGTS 699
P P+ PL+R ++ T PL + R ++P H+P P+P + R +
Sbjct: 387 PVPAVTRLPTHLPLERPVPAVTRFTTPLPLE--RPVPAVTRLPTHLPLERPVPAVTRLPT 444
Query: 700 ----TSKGPCG*TLPRAYFP--KPVPYPSRSPSHNPVEKPV-ALTR*STRLTAQCP 846
P LP + P +PVP + P+H P+E+PV A+TR T L + P
Sbjct: 445 HLPLEQPVPAVTRLP-THLPLERPVPAVTCLPTHLPLERPVPAVTRLPTPLPLERP 499
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 748 KPVPYPSRSPSHNPVEKPV-ALTR*STRLTAQCP 846
+PVP +R P+H P+E+PV A+TR T L + P
Sbjct: 338 QPVPAVTRLPTHLPLERPVPAVTRLPTDLPLERP 371
Score = 31.5 bits (68), Expect = 0.92
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV-ALTR 816
PV +P LP Q + + P L R P+P +R P+H P+E+PV A+TR
Sbjct: 627 PVPAVTRLPTHLPLEQPVPAVTSLPTHLPLER-----PLPDVTRLPTHLPLERPVPAVTR 681
Query: 817 *STRLTAQCP 846
T L + P
Sbjct: 682 LPTDLPLERP 691
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 748 KPVPYPSRSPSHNPVEKPV-ALTR*STRLTAQCP 846
+P+P +R P+H P+E+PV A+TR T L + P
Sbjct: 322 RPLPAVTRLPTHLPLEQPVPAVTRLPTHLPLERP 355
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Frame = +1
Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPR---------AYFPK--PVPYPSRSPSHN 786
PV H+P LP + + ++ P L R A+ P PVP +R P+H
Sbjct: 499 PVPAVTHLPTDLPLERPVPAVTRLPTPLLLERPVPAVTHLPAHLPLEWPVPAVTRLPTHL 558
Query: 787 PVEKPV-ALTR*STRL 831
P+E+PV A+TR T L
Sbjct: 559 PLERPVPAVTRLPTHL 574
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 309 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 488
+++ +LP K + LP S + PT P+ T PS + T TATLPS K
Sbjct: 240 QTTTTLPSTKQPTTTQQTTTTLP--STKQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTK 297
Query: 489 E 491
+
Sbjct: 298 Q 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 309 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 488
+++ +LP K + +P S + PT + T LPS + T T TLPS K
Sbjct: 208 QTTTTLPSTKQPTTTQQTTTTIP--STKQPTTTQQTTTTLPSTKQPTTTQQTTTTLPSTK 265
Query: 489 EGALP 503
+ P
Sbjct: 266 QPTTP 270
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 309 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 488
+++ +LP K P P S + PT + T LPS + T TATLP+
Sbjct: 256 QTTTTLPSTKQPTTPQLTTTTFP--STKQPTTTQQTTATLPSTKQPTTTQQTTATLPT-- 311
Query: 489 EGALPSTV 512
P+TV
Sbjct: 312 PSTKPTTV 319
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = -3
Query: 433 LGKGHV*QRGRVGERALSRGRGFSFLPGRGCAFRRGR 323
L KG V +GR+G R RGRG + PGRG RGR
Sbjct: 83 LNKGSV--QGRLGARG--RGRGMARGPGRGMVGARGR 115
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V V
Sbjct: 197 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYSWVSVATYSLVSV 256
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 257 ATYNWVSVATYSWVSV 272
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 5 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 64
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 65 ATYNWVSVATYNWVSV 80
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 21 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 80
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 81 ATYNWVSVATYNWVSV 96
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 37 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 96
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 97 ATYNWVSVATYNWVSV 112
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 53 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 112
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 113 ATYNWVSVATYNWVSV 128
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 69 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 128
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 129 ATYNWVSVATYNWVSV 144
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 85 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 144
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 145 ATYNWVSVATYNWVSV 160
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 101 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 160
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 161 ATYNWVSVATYNWVSV 176
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 117 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 176
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 177 ATYNWVSVATYNWVSV 192
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 133 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 192
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 193 ATYNWVSVATYNWVSV 208
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 149 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 208
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 209 ATYNWVSVATYNWVSV 224
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 165 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 224
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 225 ATYNWVSVATYNWVSV 240
>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 417 FDNGVGLGNVHFHGVGDFLFYRVGDVLFDGVGN 319
FD+G+G+G H H YRV DV +DG G+
Sbjct: 793 FDDGIGVGIAHNH-------YRVSDVDYDGAGS 818
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +1
Query: 589 SKCTCPLLTQ*RRKYLYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPS 768
+ T P L + P V +P P + S ++ P + P P+PV P
Sbjct: 687 TSATAPPLAAVQPTVAAPPLAAVQLPVAAPPLATALSVAQSPTV-SRPSVAVPQPVTAPP 745
Query: 769 RSPSHNPVEKPVA 807
R+P E P A
Sbjct: 746 RTPHMGKTEPPTA 758
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 345 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKE 491
P P R NP P +A P+ PR + P P +G S +A PS E
Sbjct: 846 PTPLRPTNPTPAHAASKPSNPR-PSNPTPKHAMGEGVSDNSAEPPSPGE 893
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 315 SCSLPR--RKAHPLPGRKENPLPRESARSPTLPRCQT 419
+C LPR R + P PGR NP R + +P C T
Sbjct: 4 TCYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCAT 40
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 324 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 503
+PR +P P +NP PR + ++P +PR P PS S + PS +G+ P
Sbjct: 52 IPRVTKNPFPRVTKNPFPRVT-KNP-IPRVTKEPHPSCDQRSHPSCDQGSHPSCDQGSHP 109
Query: 504 S 506
S
Sbjct: 110 S 110
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 628 KYLYPVKVPVHVPA---PLPRIQRGTSTSKGPC--G*TLPRAYFPKPVPY 762
+YLYP +P VP P P I G PC +P +P+P+PY
Sbjct: 498 EYLYPCPIPYGVPEYLYPCP-IPYGVPEYLYPCPIPYDVPEYLYPRPIPY 546
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +1
Query: 628 KYLYPVKVPVHV-----PAPLP-RIQRGTSTSKGPCG*TLPRAYFPKPVPY 762
+YLYP +P V P P+P + PCG +P +P P+PY
Sbjct: 602 EYLYPCPIPCGVPEYLYPCPIPCGVPEYLYPCPIPCG--VPEYLYPCPIPY 650
>SB_45107| Best HMM Match : efhand (HMM E-Value=1.9e-07)
Length = 270
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 389 TFPNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYCPSR 520
TF +P P + + + R T+ PT+SKRR + P R
Sbjct: 151 TFQDPRPFQDHNGSSFLRNQMQYSTFPPPTESKRRAKKHHTPPR 194
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 389 TFPNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYCPSR 520
TF +P P + + + R T+ PT+SKRR + P R
Sbjct: 20 TFQDPRPFQDHNGSSFLRNQMQYSTFPPPTESKRRAKKHHTPPR 63
>SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)
Length = 524
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = +1
Query: 568 KRKFMFQSKCTCPLLTQ*RRKYLYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFP 747
++K FQ + P + Q +RK P K+P P P +R P P P
Sbjct: 220 EQKPSFQEQKAPPPVPQTKRKP--PAKLPPRQPVAEPEPERQPEPEPEPEQEPEPEPE-P 276
Query: 748 KPVPYPSRSPSHNPVEKPV 804
+P P P P P +PV
Sbjct: 277 EPEPEPEPEPEPEPEPEPV 295
>SB_21164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -1
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRV 349
W R + W + WY + W R M D G+ ++G +YRV
Sbjct: 77 WYRVTIDQWYRVTIDQWYRVTIDQWYRVMIDQWYGVTIDQWYGATIDQWYRV 128
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 345 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 503
PLP + PLP + + P P PLP + G+ + S K+ LP
Sbjct: 450 PLPSDEPPPLPPDEEKPPPPPAPALPPLPLPPELPGSPGDSPPATSPKQPPLP 502
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 279 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 458
GG R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 1392 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 1450
Query: 459 SRTATL 476
++ + L
Sbjct: 1451 AKPSKL 1456
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 279 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 458
GG R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 263 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 321
Query: 459 SRTATL 476
++ + L
Sbjct: 322 AKPSKL 327
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +1
Query: 637 YPVKVPVHVPAP--LPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNP 789
YP P + P P P I + T P +Y P P YP PSH P
Sbjct: 200 YPPTAPSYPPTPSSYPPIAASYPPTAPSYNPTAP-SYPPTPSSYPPTQPSHPP 251
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 HPLPGRKE-NPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPST 509
HP P +++ +P P + R P + Q P PS + Q S+ P + P T
Sbjct: 202 HPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRHNQQQTPET 258
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 327 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 506
P + HP PG P+ + +P +PR T PLP ++ SRT+T PS + PS
Sbjct: 141 PSFQDHPGPGVMPQMPPQMAPGTPLMPRIPTPPLP--QNMGLGLSRTST-PSPELRVSPS 197
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 709 GPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALTR*STRLTAQCPSMLKKP 864
GP G P A+ P P P + P + KP + S T + P + KKP
Sbjct: 240 GPSGMATPGAFTPPPAPVFTPPPPYRTTAKP--FPKMSLTPTPKKPPVPKKP 289
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 655 VHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPS-----HNPVEKPV 804
V+V AP+P + + T GP L R Y +P YP R P+ + PV+ P+
Sbjct: 669 VNVKAPIPSVSSASQTQPGPNEMVLSR-YGDQP-RYPVRGPNPEGVWNGPVKSPM 721
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,955,541
Number of Sequences: 59808
Number of extensions: 482068
Number of successful extensions: 4327
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4243
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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