Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30774
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    32   0.61 
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    30   2.5  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   4.3  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   4.3  
U88178-2|AAC24413.2|  166|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +1

Query: 634 LYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYF-PKPVPYPSRSPSHNPVEKP 801
           L+P  +P+  P P P+          P     P+    PKP+P+P   P   P  KP
Sbjct: 234 LFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLKPKTKP 290



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKP 801
           P  +P H P P P+          P     P+   FPKP+P+P   P   P  +P
Sbjct: 112 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEP 166



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 634 LYPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801
           L+P  +P+  P P P+          P     P   FPKP+P P   P   P+ KP
Sbjct: 200 LFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPML-FPKPMPIPKPMPFPKPMPKP 254



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKPVALTR 816
           P+  P+  P P+P+          P     P+    PKP+P+P   P   P  KP+   +
Sbjct: 206 PIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPK 265

Query: 817 *STRLTAQCPSMLKKP 864
              +L  + P    KP
Sbjct: 266 PKLKLKPK-PMPFPKP 280



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 726 PTPCIFPKTSALPVEKPVP*PGRKTSGLNPLKYTFDRPVPVH 851
           P+P  FPK    P  KP P P  K     P    F +P+P H
Sbjct: 32  PSPMPFPKPMPKPKPKPKPMPKHKPKPF-PKPMLFPKPMPKH 72



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKP 801
           P  +P H P P P+                P+   FPKP+P+P   P   P  +P
Sbjct: 48  PKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEP 102



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 637 YPVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV 804
           +P  +P   P P P+ +        P     P   FPKP+P P   P   P+ KP+
Sbjct: 167 FPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPML-FPKPMPIPKPMPFPKPMPKPM 221



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 634 LYPVKVPVHVPAPLPR--IQRGTSTSKGPCG*TLPRAY-FPKPVPYPSRSPSHNPVEKP 801
           L+P  +P H P P P+  +         P   + P++  FP P+P+P   P      KP
Sbjct: 64  LFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKP 122



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 652 PVHVPAPLPRIQRGTSTSKGPCG*TLPRA---YFPKPVPYPSRSPSHNPVEKPV 804
           P+  P P+P+ +  +     P     P+    + PKP P P   P   P+ KP+
Sbjct: 86  PMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPM 139


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPK--PVPYPSRSPSHNPVEKPVALT 813
           P   PVH P   P I         P     P    P   P+P P  SP+   V+KP   T
Sbjct: 494 PSSAPVHTPPAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLVQKPTTPT 553

Query: 814 R*STRLTAQCP 846
             S    AQ P
Sbjct: 554 DASKPFVAQPP 564


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYP 765
           P++VPV VP P P + + T  +  PC        + +P P P
Sbjct: 167 PIRVPVPVPVPTP-VYQPTYCAVPPCPAPAATPVYAQPAPRP 207


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALTR* 819
           P+KV + +     R    T T    C    P    P P+P  SR+P  +PV+ P  LT  
Sbjct: 202 PMKVNIPIDESRHRSSTWTPTDSS-CSGISPSTRVPPPIP--SRAPVMSPVQSP--LTHP 256

Query: 820 STRLTAQCPSML 855
                 +CP  L
Sbjct: 257 PVAPMPRCPPPL 268


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +1

Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALTR* 819
           P+KV + +     R    T T    C    P    P P+P  SR+P  +PV+ P  LT  
Sbjct: 202 PMKVNIPIDESRHRSSTWTPTDSS-CSGISPSTRVPPPIP--SRAPVMSPVQSP--LTHP 256

Query: 820 STRLTAQCPSML 855
                 +CP  L
Sbjct: 257 PVAPMPRCPPPL 268


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 315 SCSLPRRKAHPLPGRKENPLPRESARSPTLPR 410
           S S PRR+    P ++    PR + RSP+ PR
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPR 119


>U88178-2|AAC24413.2|  166|Caenorhabditis elegans Hypothetical
           protein W09C3.3 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 838 GRSNVYFNGLRPLVFLPGYGTGFSTGKALVLGNMHGVGSIHMDLYWYL 695
           G S +Y    +   F  G   GFS    L  G    +  +H+DLY++L
Sbjct: 19  GNSVLYSKIGKYFPFAVGEKAGFSMASVLSKGEYISMPVVHVDLYYFL 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,318
Number of Sequences: 27780
Number of extensions: 349175
Number of successful extensions: 1512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)