BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30774 (867 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g66850.1 68418.m08428 protein kinase family protein contains ... 32 0.57 At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 2.3 At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 29 3.0 At4g36360.2 68417.m05164 beta-galactosidase, putative / lactase,... 29 4.0 At4g36360.1 68417.m05163 beta-galactosidase, putative / lactase,... 29 4.0 At2g39870.1 68415.m04899 expressed protein 29 5.3 At1g62510.1 68414.m07053 protease inhibitor/seed storage/lipid t... 29 5.3 At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 7.0 At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 28 7.0 At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 28 7.0 At1g55070.1 68414.m06290 F-box family protein contains Pfam prof... 28 7.0 At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 7.0 At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 28 9.3 >At5g66850.1 68418.m08428 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA MAP3K gamma protein kinase GI:2315152 Length = 716 Score = 31.9 bits (69), Expect = 0.57 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +3 Query: 285 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC 446 PQ R+ R + P R + PL + PR+S SP PR T RDC Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC 306 >At1g20130.1 68414.m02518 family II extracellular lipase, putative contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566) Length = 1006 Score = 29.9 bits (64), Expect = 2.3 Identities = 19/54 (35%), Positives = 22/54 (40%) Frame = +1 Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801 P P V P P + PC P+ PKP P PS SP +P KP Sbjct: 6 PDPSPKPVAPPGPSSKPVAPPGPSPCPSPPPKPQ-PKPPPAPSPSPCPSPPPKP 58 Score = 29.9 bits (64), Expect = 2.3 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = +1 Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV 804 P P P+P P+ Q C T P+ PKP P P P+ P KPV Sbjct: 44 PAPSPSPCPSPPPKPQP-KPVPPPACPPTPPKPQ-PKPAPPPEPKPAPPPAPKPV 96 Score = 28.7 bits (61), Expect = 5.3 Identities = 16/54 (29%), Positives = 21/54 (38%) Frame = +1 Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801 P P P P P + + + P P PKP P P+ +PS P P Sbjct: 87 PAPPPAPKPVPCPSPPKPPAPTPKPVP---PHGPPPKPAPAPTPAPSPKPAPSP 137 >At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar to proline-rich protein [Arabidopsis thaliana] gi|6782442|gb|AAF28388; contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 448 Score = 29.5 bits (63), Expect = 3.0 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 643 VKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKP 801 V PV V P P+++ K PC P+ P PVP P +EKP Sbjct: 222 VPPPVPVYKPPPKVELPPPIPKKPCPPKPPKIEHPPPVPVYKPPPK---IEKP 271 >At4g36360.2 68417.m05164 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor SP:P48980 from [Lycopersicon esculentum] Length = 855 Score = 29.1 bits (62), Expect = 4.0 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -3 Query: 799 VFLPGYGTGFSTGKALVLGN--MHGVGSIHMDLYWYLYLFVYGVKEQA 662 V LP G F + +LG +HG+ MDL W + + G+K +A Sbjct: 552 VGLPNVGGHFESWNTGILGPVALHGLSQGKMDLSWQKWTYQVGLKGEA 599 >At4g36360.1 68417.m05163 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor SP:P48980 from [Lycopersicon esculentum] Length = 856 Score = 29.1 bits (62), Expect = 4.0 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -3 Query: 799 VFLPGYGTGFSTGKALVLGN--MHGVGSIHMDLYWYLYLFVYGVKEQA 662 V LP G F + +LG +HG+ MDL W + + G+K +A Sbjct: 552 VGLPNVGGHFESWNTGILGPVALHGLSQGKMDLSWQKWTYQVGLKGEA 599 >At2g39870.1 68415.m04899 expressed protein Length = 330 Score = 28.7 bits (61), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 649 VPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNP 789 +P H+ LP +++ TS+ P R FP PY SPS +P Sbjct: 5 LPPHLSVNLPTMEKTTSSELTPT-----RLGFPNEFPYEFDSPSFSP 46 >At1g62510.1 68414.m07053 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 Length = 149 Score = 28.7 bits (61), Expect = 5.3 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +1 Query: 694 TSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPVALTR*STRLTAQCP 846 T ++ G CG P+ PK P PS P NP KP S + A+CP Sbjct: 22 TISACGNCGCPSPK---PKHKPSPSPKPKPNPKPKPTPHPSPSPAI-AKCP 68 >At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein identical to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 Length = 168 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 324 LPRRKAHPLPGRKENPLPRESARSPTLP 407 +P K P+P K P+P S SP++P Sbjct: 39 VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66 >At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical to gi_11935086_gb_AAG41963 Length = 162 Score = 28.3 bits (60), Expect = 7.0 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +1 Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV 804 P P+H P+ P + TS + P P P + +P+ PVE PV Sbjct: 24 PATAPIHSPSTSPHKPKPTSPAISPAA----------PTPESTEAPAKTPVEAPV 68 >At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical to gi_11935086_gb_AAG41963 Length = 185 Score = 28.3 bits (60), Expect = 7.0 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +1 Query: 640 PVKVPVHVPAPLPRIQRGTSTSKGPCG*TLPRAYFPKPVPYPSRSPSHNPVEKPV 804 P P+H P+ P + TS + P P P + +P+ PVE PV Sbjct: 24 PATAPIHSPSTSPHKPKPTSPAISPAA----------PTPESTEAPAKTPVEAPV 68 >At1g55070.1 68414.m06290 F-box family protein contains Pfam profile: PF00646 F-box domain Length = 393 Score = 28.3 bits (60), Expect = 7.0 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 Query: 523 DPSPSRYMCQNLTPLKRKFMFQSKCTCPLLTQ*RRKYLYPVKVPVHVPAPLPR 681 D P+ + + L+ L K M + +C C LL+ R+ Y P+ P P PR Sbjct: 33 DRIPADLVIKILSKLSAKSMAKCRCVCKLLSSIIRQPNYNQLFPIKYPDP-PR 84 >At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi domain-containing protein contains Pfam profiles PF02170: PAZ domain, PF02171: Piwi domain Length = 1194 Score = 28.3 bits (60), Expect = 7.0 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = -1 Query: 405 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 319 VG+G+V GVGD VGDV DGVG+ Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222 >At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative Length = 528 Score = 27.9 bits (59), Expect = 9.3 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 677 PVYKEVQVPVKVHVDRPYPVHISQNQCLTRREARPITR*KNQW 805 P Y + Q + +V R YP I Q Q L +++ + + + QW Sbjct: 55 PQYLQSQSDAQQYVQRGYPQQIQQQQQLQQQQQQQQQQQEQQW 97 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,881,025 Number of Sequences: 28952 Number of extensions: 337515 Number of successful extensions: 1244 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1047 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1208 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 2028915200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -