BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30773 (847 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017... 29 3.5 10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 29 4.7 06_01_0135 + 1039018-1041474 29 6.2 11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 28 8.1 04_03_0904 + 20717005-20718087 28 8.1 01_01_0840 - 6557931-6558377 28 8.1 >05_07_0034 - 27200513-27200605,27200750-27200802,27201724-27201797, 27202762-27202830,27203070-27204148 Length = 455 Score = 29.5 bits (63), Expect = 3.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 444 QPSPHTPPTLHPQLRRTPRLLF 509 +P P PPTL P+L R PR+ + Sbjct: 334 EPEPPPPPTLPPRLLRLPRMQY 355 >10_07_0144 - 13367579-13368805,13369540-13369578,13369662-13369826, 13370083-13370193 Length = 513 Score = 29.1 bits (62), Expect = 4.7 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = +3 Query: 639 FTLAPAVSTYAAAPIVTKVFMPPL-LWLPNAGWPPVVAKYASSCLRPPTS 785 +T A+ Y AAP +PP W + WP V A S PPTS Sbjct: 348 YTSGIAIPIYPAAPAYWGCMIPPPGAW--SLPWPATVQSQAISSSSPPTS 395 >06_01_0135 + 1039018-1041474 Length = 818 Score = 28.7 bits (61), Expect = 6.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +1 Query: 532 AYAATCGCLQDHQSWQYLLCHLTPSTNSPWWFLRRTLRWPPLYLPMPL 675 A+ A C+ ++W H N F LRWPPL L MP+ Sbjct: 477 AFRAFARCILSVRTWLGFHLHPQDMINQ---FSALDLRWPPLTLAMPI 521 >11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589, 1990708-1990786,1990952-1991038,1991688-1991966, 1992109-1992822 Length = 501 Score = 28.3 bits (60), Expect = 8.1 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +3 Query: 648 APAVSTYAAAPIVTKVFMPPLLWLPNAGWPPVVAKYASSCLRPPTSNWFPLVGKEL 815 A A+ AAA + V M L WL G P + L PP S PL+G+ L Sbjct: 3 AAALLLLAAAAAIVVVAMV-LRWLLLLGGP-AAGRLGKRALMPPGSTGLPLIGETL 56 >04_03_0904 + 20717005-20718087 Length = 360 Score = 28.3 bits (60), Expect = 8.1 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 447 PSPHTPPTLHPQLRRTP 497 P+P+TPPT PQ + TP Sbjct: 269 PTPYTPPTYKPQPKPTP 285 >01_01_0840 - 6557931-6558377 Length = 148 Score = 28.3 bits (60), Expect = 8.1 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = -2 Query: 204 RRQRCGHRERCEL 166 RR RCGHR RC L Sbjct: 54 RRPRCGHRRRCHL 66 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,078,204 Number of Sequences: 37544 Number of extensions: 505214 Number of successful extensions: 1843 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1838 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2350456800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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