Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30773
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017...    29   3.5  
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    29   4.7  
06_01_0135 + 1039018-1041474                                           29   6.2  
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199...    28   8.1  
04_03_0904 + 20717005-20718087                                         28   8.1  
01_01_0840 - 6557931-6558377                                           28   8.1  

>05_07_0034 -
           27200513-27200605,27200750-27200802,27201724-27201797,
           27202762-27202830,27203070-27204148
          Length = 455

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 444 QPSPHTPPTLHPQLRRTPRLLF 509
           +P P  PPTL P+L R PR+ +
Sbjct: 334 EPEPPPPPTLPPRLLRLPRMQY 355


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 639 FTLAPAVSTYAAAPIVTKVFMPPL-LWLPNAGWPPVVAKYASSCLRPPTS 785
           +T   A+  Y AAP      +PP   W  +  WP  V   A S   PPTS
Sbjct: 348 YTSGIAIPIYPAAPAYWGCMIPPPGAW--SLPWPATVQSQAISSSSPPTS 395


>06_01_0135 + 1039018-1041474
          Length = 818

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 532 AYAATCGCLQDHQSWQYLLCHLTPSTNSPWWFLRRTLRWPPLYLPMPL 675
           A+ A   C+   ++W     H     N    F    LRWPPL L MP+
Sbjct: 477 AFRAFARCILSVRTWLGFHLHPQDMINQ---FSALDLRWPPLTLAMPI 521


>11_01_0261 -
           1989988-1990090,1990232-1990368,1990483-1990589,
           1990708-1990786,1990952-1991038,1991688-1991966,
           1992109-1992822
          Length = 501

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 648 APAVSTYAAAPIVTKVFMPPLLWLPNAGWPPVVAKYASSCLRPPTSNWFPLVGKEL 815
           A A+   AAA  +  V M  L WL   G P    +     L PP S   PL+G+ L
Sbjct: 3   AAALLLLAAAAAIVVVAMV-LRWLLLLGGP-AAGRLGKRALMPPGSTGLPLIGETL 56


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 447 PSPHTPPTLHPQLRRTP 497
           P+P+TPPT  PQ + TP
Sbjct: 269 PTPYTPPTYKPQPKPTP 285


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 204 RRQRCGHRERCEL 166
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,078,204
Number of Sequences: 37544
Number of extensions: 505214
Number of successful extensions: 1843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)